Pseudomonas knackmussii: PKB_1338
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Entry
PKB_1338 CDS
T03081
Symbol
rimO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pkc
Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pkc03009
]
PKB_1338 (rimO)
Enzymes [BR:
pkc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PKB_1338 (rimO)
Ribosome biogenesis [BR:
pkc03009
]
Prokaryotic type
ribosomal protein modification factors
PKB_1338 (rimO)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CDF82703
UniProt:
A0A024HE14
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All DBs
Position
complement(1385648..1386970)
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AA seq
440 aa
AA seq
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MSTATPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDTAKAE
SLDAIGEAIAENGKVIVTGCMGVSEDAIRDVHPSVLAVTGPQQYEQVVNAVHEVVPPKAD
HDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAQRL
VKAGVKELLVISQDTSAYGVDLKYKLDFWEGQPVKTRMLELCEALSSMGVWVRLHYVYPY
PNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKKWREICPELTIR
STFIVGFPGETEKDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLELVPDDVKQERW
ERFMAHQQAISAARLQRKIGQEIEVLIDEVDAEGAVGRSAADAPEIDGAVYIDSFDVKPG
DKVRVRITDADEYDLWAELA
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcaacgcccaaagtcggtttcgtttcccttggttgccccaaagcaacggtc
gactccgaacgcatcctcacccagctgcgcatggagggctacgagatcgtgcccacctac
gaggacgccgacgtggtggtggtcaacacctgtggtttcatcgacaccgccaaggccgaa
tccctggacgccatcggcgaagccatcgccgagaacggcaaggtgatcgtcaccggctgc
atgggcgtatccgaagacgccatccgcgacgtgcaccccagcgtgctcgccgtcaccggc
ccgcagcagtacgagcaggtggtcaacgcggtgcatgaagtggtgccgcccaaggccgac
cacgaccccttcgtcgacctcgtaccgccgcagggcatcaagctgaccccgcgccactac
gcctacctgaagatttccgaaggctgcaatcacagctgcagcttctgcatcatcccgtcg
atgcgcggcaagctggtcagccgcccggtgggcgatgtgctcagcgaagcccagcgcctg
gtcaaggccggcgtcaaggaactgctggtgatctcccaggacaccagcgcctacggcgtc
gacctcaagtacaagctggacttctgggaaggccagccggtgaagacccgcatgctcgag
ctgtgcgaagcgctgtcgagcatgggcgtgtgggtgcgcctgcactacgtctacccgtac
ccgaacgtcgacgacgtcatcccgctgatggccgccggcaagctgctgccgtatctcgac
atccccttccagcacgccagcccgaaagtgctcaaggccatgaagcgtccggccttcgag
gacaagaccctggcgcgcatcaagaagtggcgcgagatctgcccggaactgaccatccgc
tcgaccttcatcgtcggcttccccggcgagaccgagaaagacttccagtacctgctagac
tggctgaccgaagcccagctcgaccgcgtcggctgcttccagtactcgccggtcgaaggc
gccccggccaacgacctgggcctggagctggtaccggacgacgtcaagcaggagcgctgg
gagcgcttcatggcgcaccagcaggcgatctccgccgcgcgcctgcagcgcaagatcggc
caggaaatcgaagtgctgatcgatgaagtcgacgccgaaggcgcagtaggccgttccgcc
gccgacgccccggaaatcgacggcgccgtctacatcgacagcttcgacgtgaagccgggc
gacaaggtgcgcgtgcgcatcaccgacgccgacgaatacgacctctgggccgagctggcc
tga
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