Paraburkholderia kirstenboschensis: RW095_20740
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Entry
RW095_20740 CDS
T09457
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RW095_20740 (pdeR)
Enzymes [BR:
pkf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
RW095_20740 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_8
GGDEF_2
PAS_3
Motif
Other DBs
NCBI-ProteinID:
WOD15681
LinkDB
All DBs
Position
2:complement(2619671..2621674)
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AA seq
667 aa
AA seq
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MNDDHHEQVLYAQFGTSSPCWRLSSDSNALELTPVTGDMPANVAIPLNPQQASQIRCLTG
ITSHLVLDVRLFGEPLRLHLVGRKINSSSWAGTASAYDDTESVARDLMHGLSFAEQVVSE
VNSVVVIVDRHGRVQRFNRLAEELTGVKEENIVGRNVWALFMSSEDGAASSQNIAGFFNR
GVSYEVERRIKTLHGERLFLFRNKFVQSGSGVDEQYLICSGTDITEERLAQERLTQLANT
DSLTGLPNRNAIQDKIRTAIEETSPGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSA
AIGMCLTEGDTLARLGGDEFIVLAAKDTAHELEATAQRILERMRTPFSLGLVEVYTGCSI
GIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRKVAEYMWLDTNLRRGLE
EGQLTLHYQPKLLLSTGAVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMQ
TAAKQAAKWQADGYNLRIAINVSARQLVDTAVVRHFTEALEQAKLEPCLVDVELTESCLI
EDEAAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQ
ALVRSMVVVAQELDFKVVAEGIETESEEAFMKGLGVEYVQGYLYAHPMPAADFERWLQDR
QKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgaccatcacgagcaggtgctttatgcgcagttcggcacaagcagcccttgc
tggcgtctgtcgagcgacagcaacgcgctcgaactgacgccagtcactggcgatatgcca
gccaacgttgccattccgctcaatcctcagcaggcatcgcaaatccgttgcctcactggc
attacgtctcacctggttctcgacgtgcggctcttcggcgagcctctgcgtttgcacctc
gtcggcagaaagatcaacagcagcagttgggccggcaccgcgtccgcctatgacgacacc
gaatctgtcgcgcgcgatctgatgcatggcctgtcgttcgccgagcaagtcgtgtccgaa
gtgaattccgttgtcgtgatcgtcgaccggcacgggcgagtccagcgctttaaccggctc
gcggaggaactcacgggcgtcaaggaagagaacatcgtcgggcgcaatgtgtgggcgctt
ttcatgtcctcggaagacggcgcggcgtcgagtcagaacatagcgggcttcttcaatcgc
ggggtgtcgtacgaagtcgagcggcgcatcaagacactgcacggcgaacggctctttctg
tttcgcaacaagttcgtgcagagcggcagcggcgtagacgagcagtacctgatctgctcg
ggcacggacatcaccgaggaacgtcttgcgcaggagcgtctcacgcaacttgccaacacc
gattcgctcacgggcctgcccaatcgcaatgcgatccaggacaagatccgcaccgcgatc
gaggagacgtcgccgggcgaatcggtgggtgtgctttttctcgatctggataacttcaag
aaggtcaacgatcactacggccacgtattcggcgaccgtctgatccgcgacgtgtcggcc
gccatcggcatgtgcctgaccgaaggcgacacgctcgcgcggctcggcggcgacgagttc
atcgtgctcgcggcaaaagacacggcgcacgaactcgaggcaaccgcgcagcgcattctc
gaacgcatgcgcacgccgtttagcctcgggctcgtcgaagtctatacgggctgctcgatc
ggcattgcgcgctatccggaacacggcgacaacctggagtcgctgatccgctcggccgat
accgccatgtacgtcgcgaaagacgaaggcaagcgcacgcaccgcgtattttcgccggat
atgaaccgcaaggtcgccgagtacatgtggctcgacacgaacctgcggcgcggcctcgaa
gaaggccagctgacgctgcactatcagcccaagctgctgctctcaaccggcgcggtgcaa
ggcgtggaagcgctggtgcgctggaattcgccggaacgcgggcagatcatgccggcggag
ttcattcgttatgccgaagagtccggtttgatcggcgtgctcggccgctgggtgatgcaa
acggccgcgaaacaggcggccaaatggcaagcggacggctacaacctgcgcatcgcgatc
aatgtgtcggcgcggcaactggtggatacggcggtggtccggcatttcaccgaagcgctc
gagcaggcgaagctcgaaccatgcctcgtcgacgtggaactcaccgagagctgcctgatc
gaggacgaagccgcggccatcgacctgatcaagcagttccgtcaacttggcgcgcaagtg
catctggacgacttcggcaccggctattcgtcgctatcgcagttgggccgcattccgctc
gatgtgatcaagctggaccgcagcttcgtgcgttcaatcaatgccgacaccaaagcgcaa
gcactggtccgctccatggtggtggttgcgcaggaactcgatttcaaggtcgtcgccgaa
ggaatcgaaaccgagtccgaagaggctttcatgaaagggctgggcgtcgaatacgtgcag
ggctacctgtacgctcatccaatgccggccgcggacttcgagcgctggttgcaggacagg
cagaagctcaggctgatcgcctga
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