Plectropomus leopardus (leopard coralgrouper): 121947812
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Entry
121947812 CDS
T07454
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121947812 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plep03021
]
121947812 (polr1a)
Enzymes [BR:
plep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121947812 (polr1a)
Transcription machinery [BR:
plep03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
121947812 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
HMG_box
Com_YlbF
SURF2
CDC45
Motif
Other DBs
NCBI-GeneID:
121947812
NCBI-ProteinID:
XP_042348870
LinkDB
All DBs
Position
9:6466304..6494883
Genome browser
AA seq
1695 aa
AA seq
DB search
MLFRKEVPWRRLEGMSFGMYSAEEIRKLSVKAITNSRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRSSCLSCHMLTCSRAAIHLL
LNQLKLVDHGAMQDVYQIEQVLNQHLEQNPKATGDEIELVLKEFTDMIVGENADGSENIK
PIKHLVEKKSSLINDFWKSHMKTRKCPYCRGGRFTVRCEHNSKLIVTMPSGAQISGNTDE
NLMAGKRVYLTASTAREHINKLWEEEGFFLKHLFSGLNEGAVSEEGGKGFYPDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCEIIRKLLALLAGEKTPQEGEAPEQTDQ
TFLKGIPGQTLTDKLYNIWIRLQTHVNVVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRRTILSAASLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRASIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPP
AILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYNPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANKQRKKIIQKSLKIGTKALQAAFNLPSNMDQAEAQSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNEINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIKRSQGLDEVLARLDPQTASQHFASIQRWKAKRETACPRRGAFLLYS
QKKLAKLKQTEQGTEPDVCGRNAAIQRLMQQWHSLDESSRSKYSRKSARCPEPSLGLFRP
DICFGSVSENFHSITEKYLQDEGRTGQDSLDTHSLRQLLLYKWQRSLCEPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNTKKALKR
AKMLRKKLTRVCLAEVLQKVDVTETLRIENHHKMRSFRVIFHFLSPERYCEDKLLSPQQI
LRYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDHGANGTAGTAGLDDGEGEEER
EIIDDQANEGDADASDAKRKSKQEEEVDYDSEDEERADDGEGKDDQGEKNEEVEENAETP
ENSQTAFVGVRMEKKTKRAKGGGGGEEGGKSLNQMRVNSVLESNSAIERYCYDRQHELWC
EVDLVLPVSKVHFDLTSVLSTLAQNAVIMETEGLTRCLLSETTTKTGEKETVLNTEGINM
HELFKHSDILDINRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVA
DYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKV
VKGGTGLFELKQPLQ
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttagaaaagaagtgccatggcggcgactggagggcatgtcgtttggcatgtac
tctgccgaagagataaggaagttgagtgtgaaggcaatcacaaactccaggtttcttgat
gctgttgggaatgtggccccaaacagcctctacgatttggccttaggaccagctgacagc
aaagaagtgtgttcaacctgctgtcaggacttcaacaactgtccaggccaccttggacat
gtagagctgcctctgcctgtatacaacccactgttctttgataaactttacctgctgatt
cgtagttcctgtctgtcatgtcacatgttaacatgttcccgagctgccatccacctgctg
ctgaaccagctgaagttagtggaccatggcgccatgcaggacgtctaccagatagaacaa
gtgctcaaccagcacctagagcagaatcccaaagccactggagatgagatcgagctggtg
cttaaggagtttacagacatgatagttggagagaacgctgatggttcagagaacatcaaa
ccgatcaaacaccttgttgaaaagaagagtagtctgataaatgacttctggaagagccac
atgaagacgagaaagtgcccttactgcaggggcggcaggttcacggtgcgctgtgagcat
aacagtaagctgattgtcaccatgccatcaggagcacagatcagtggaaatactgatgag
aatctgatggctggaaagagggtctacctgacagccagtactgccagagaacacatcaac
aagctgtgggaggaagaagggttcttcttgaagcatctgttctcggggctgaatgagggg
gcagtgtcagaggagggagggaaaggtttctatccagacctcttcttcctggagctgttg
gtggtcccaccctgcaggtatcgtccaataaatcgactgggcgaccagatgtttacaaat
ggtcagacagtcaacatgcaggctgtcatgaaggactgtgaaatcataaggaaacttctg
gctctcctagcaggagagaagactcctcaggagggagaggctcctgagcagacagaccag
acgtttctgaagggaattcccggacagacacttacagataaactctacaacatctggatc
cgactacagacccacgttaacgtcgtctttgacagtgacatggacaaaatgatgacagag
aaataccctggaatcagacagatcttagagaagaaggatggattgtttcggaaacacatg
atgggaaaacgagtggattacgctgcacgatctgtcatctgtccagacatgtacatcggg
accaatgagatcggaataccaatggtgtttgccaccaagctgacgtacccccagccggtc
actccatggaacgtgaaggagcttcgtcaggctgttctgaacgggcccaacgtccaccct
ggtgcatccatggtgataaacgaagatggcaggagaaccatcctatcagctgccagcctt
gcacagagagaagctgttgccaagcaactgctaacgccttgtcccggtccacataagatg
cccatgaagatcgtgaatcgtcatataaagaacggagatgttttgttactgaacagacag
ccgactctgcacagagcctccatacaagcccactgtgcgcggatcttaccaggagagaag
gttttaaggctccactacgccaactgcaaggcgtacaacgctgactttgatggagatgaa
atgaatgcgcacttccctcaaagtgagctgggcagagcagaggcctacacgttagtcagc
accgaccagcagtacctcgtccccaaggatggtaaacctttggcaggtctgatccaggac
cacatggtatcgggtacgaggatgacgatacgaggctgtttctttaccagagtccagtac
atcgagttggtgtacagaggactgactgacaaaccagggagagttaaactgctgccgccg
gccatcctcaaaccacagcagctgtggacaggaaagcaggtggtgtcgacgctgctgctg
aatgtaatcccacagaaggctgtgcctctcaacctggttggcaaatccaaaatccccagc
aaagcgtggatccaagtccccccacgagctgcaccaggatacaaccctgacagcatgtgt
gactcacaggtggtgattcgtcagggggagctgttggtgggggttctggacaaagctcac
tacggctcctcagcctacggtctggtccactgctgctacgagctgtatggaggggagacc
agcggcaaactgctcagctgtctggctcgactcttcactgcctacctgcagctttacaga
ggcttcactctgggtgtggaagacatcctagtgaaaccaggcgccaacaagcagaggaaa
aaaatcattcaaaaatcactgaagattggcaccaaagccctacaggctgccttcaacctg
ccctctaatatggatcaagctgaggctcagagccgctggcaggacgctcacctcaaccca
gaccagagagacttcagcatggccgaccacaagttcaaagaagtagccaaccaagtgaac
aacgaaatcaacaaggtgtgcatgccagttggactccacacctctttccccgacaacaac
ctccaactgatggtccaatcaggagccaaggggtcgactgtaaacaccatgcagatttct
tgtttgctaggtcagattgagttggagggccgtaggcctccactgatgccttctgggaaa
tctttgccgtgcttccagccatatgacccttcacccggagccgggggctttgtatctgga
aggttcctcacaggcatcaaaccacaggagtttttcttccactgtatggccggcagagag
ggacttgtcgacacagctgtcaaaacatctagatcaggatacctacagagatgtgtcata
aagcacctggagggtttggtggtgcagtatgatctgacggtgagggacagcgatggatct
gtggtccagttcctgtacggtgaagacggacttgatatccccaagactcagttcctgcag
ccgagacagttccccttcatagaggacaactacgaggtgatcaagaggtcccagggcctg
gacgaggttttggcacgtttggaccctcagaccgccagtcaacattttgcgtccatccag
cgctggaaagcaaagagagagacagcctgtccacgcagaggagcattcctgctgtattct
cagaagaagttggccaaactaaaacaaactgaacaaggaacagaaccagacgtctgcggt
agaaatgctgccatacagcggctcatgcagcagtggcactctctggatgaatccagcaga
tctaaatacagcaggaagtcagcgcgctgccctgagccctcgctgggcttgtttcgccct
gacatctgcttcggatcagtgtctgaaaactttcacagcatcacagagaaatacctccag
gatgaaggcaggacagggcaggacagcctggacacacacagcctccggcagctgttactc
tataagtggcagcgctcgctgtgtgagccgggtgaagcagttggtctgctggcagctcag
tccataggcgagccctccacccagatgaccctcaacaccttccacttcgccggcagaggg
gagatgaacgtcactttaggaatacctcgactgagagagatcctcatggtggccagctcc
aacattaaaactcctatgatgagcgtccccgtgctgaacaccaagaaagccttgaagagg
gccaagatgcttcgaaaaaaactcaccagagtgtgtctggctgaggtcctgcagaaggtg
gatgtaacagagacactgcggatagaaaatcaccacaagatgcggtcgttcagagtcatc
tttcacttcctttctcctgaacgttactgtgaagataagctgctatctccccaacagatc
ctccgctatatggaaaccaggtttttccgtctcctgctcgaagccattaagaagcgcagc
gccaagctggcctccatcgctgtggaaacgaggaaggccacgcccagagataaggaccat
ggtgccaatggaacagccggcacggcagggttagatgacggtgagggagaagaggagcga
gagatcattgatgaccaggccaacgaaggagacgctgatgcctcagatgccaagcgaaaa
agcaaacaggaagaggaggtggactatgatagtgaggacgaggagagagctgatgacggc
gagggtaaagatgatcagggggagaaaaatgaggaggtggaggagaatgcggagacgccg
gagaattcccagacagcgtttgtaggagtgcgaatggagaagaagacgaaacgagcaaaa
ggagggggggggggagaagaaggaggaaaatctttgaatcagatgagggtgaattctgtt
ctggagtcgaactcagcgatagaaagatactgctacgatcgtcagcatgaactctggtgc
gaggttgacctggtcttaccggtgagcaaagtgcactttgacctgacttcagtcctgtca
acactggcccagaacgcagtcatcatggagactgaaggcttgacacgctgcctactgagc
gaaactacaacaaagacgggagagaaagagacggtcctcaacacagaaggcatcaacatg
cacgaattgttcaagcacagtgatatcttggacatcaacaggctgtactccaatgaggtc
catgccatggctaagacctatgggattgaagtggctctgaaagtcatagagaaggaaatc
aaagatgtctttgccgtctatggtatcgaggtggaccccagacatctgtcactggtagca
gattacatgtgttttgaaggcgtatacaagcctttaaaccgacacgccatccggtccaac
tcctcccctctgcagcagatgaccttcgagaccagctacaagttcctcaaacaggctacc
atgctggggtcacatgatcagctggtgtctccttcagcctgcctggttgtgggaaaggta
gtcaaaggtggaacaggactgtttgaactgaaacaacctctgcagtag
DBGET
integrated database retrieval system
