Perognathus longimembris pacificus (Pacific pocket mouse): 125351465
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Entry
125351465 CDS
T08928
Symbol
Hlcs
Name
(RefSeq) LOW QUALITY PROTEIN: biotin--protein ligase
KO
K01942
biotin---protein ligase [EC:
6.3.4.9
6.3.4.10
6.3.4.11
6.3.4.15
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00780
Biotin metabolism
plop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00780 Biotin metabolism
125351465 (Hlcs)
Enzymes [BR:
plop01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.9 biotin---[methylmalonyl-CoA-carboxytransferase] ligase
125351465 (Hlcs)
6.3.4.10 biotin---[propionyl-CoA-carboxylase (ATP-hydrolysing)] ligase
125351465 (Hlcs)
6.3.4.11 biotin---[methylcrotonoyl-CoA-carboxylase] ligase
125351465 (Hlcs)
6.3.4.15 biotin---[biotin carboxyl-carrier protein] ligase
125351465 (Hlcs)
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Gene cluster
GFIT
Motif
Pfam:
BPL_LplA_LipB
BPL_C
BPL_N
Motif
Other DBs
NCBI-GeneID:
125351465
NCBI-ProteinID:
XP_048202200
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Position
5:5012917..5143377
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AA seq
861 aa
AA seq
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MLITLCYLYLWARWGRAPAALVPGTVRRLRARCSFTFCAAAAQPGGARVCLRRGGRVFCV
GESQSIDDLNKWVLNLISPFRLQAEHIAFVTESIWVQGDNFQRRLSSETVVKWSDYCLPL
ACRPGDPYQFIAEASVDNFSKLGVAFMEDRLQMDNGLIPQKIVSVHLRDSILKELKDQAA
NGQAQGLEPATGPPPEPKPGQDAVGRAGSDEPRAPGQDSSKQPAGGDREHGEHSHLHLFS
CHECLELENSTIESVKFASAENIPDLPYDHSSGLEGVTDELCPKREESRVNMAGKAPNIL
IYVGASTREAVGRLEQVRSVVADCVDVDSYTIYHLPEDSALRDPWADNCLLLVVAALEPI
PKDLSQKFMAYLSQGGKVLALSSPFTFGGFQVTRKGTLQKTVQGLVFCKADRSEVRLSVL
SSGCVYEAGAGEHQPCRLHGHLDTEDKDRTIMQVPFGSCGGEAVLCQVHLELPPRSPTVQ
TQQDFDLLKSSNMRRYEVLQEILTALGISCEVRQVPALTPVSLLLATEEIRDPLMQWLGA
HVDPEGVIKSSKLSLKFVSSCASEVEVTPSSIPVVTDTEDFSSDHFNLEIYRQNLQTKQL
GKVILFAEVTPTTMNLLDGLMFEMPQEMGLIAIAVRQTQGKGRGPNAWLSPVGCALSTLL
ISIPLRSQLGQRIPFVQHLMSLAVVEAVRSVPKYQDINLRVKWPNDIYYSDLMKIGGVLV
NSTLLGETFYILIGCGFNVTNSNPTICINDLIAEHNRQHEAGLQPFRADHLIARAVTVLE
TLVHTFQDEGPQGVLPLYYKYWLHSGQQVRLGSTEGPQVSIVGLDDSGFLQVLGEDGRIV
TVHPDGNSFDMLRNLIVPKQQ
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcacgctgtgctacctgtacctgtgggcgcgctgggggcgcgcgcccgcggcg
ctcgtgcccggcacggtgcggcggctgcgcgcgcgctgctccttcactttctgcgccgcg
gccgcgcagcccgggggcgcgcgcgtgtgcctgcgccgcggcggccgcgtcttctgcgtc
ggggagagccagtccatcgacgacttgaacaaatgggtgctgaatctcatctctcccttt
agacttcaagcagaacacatagcatttgtgacagagagcatttgggttcaaggtgacaat
ttccagaggcggttgtcttcagaaacagttgtcaagtggtctgactactgtttgccgtta
gcttgccgacctggggacccctaccagttcattgctgaagcaagtgtggacaatttcagc
aagctgggagtagcattcatggaagataggctccagatggataatgggctgatacctcaa
aagatcgtctcggtacacttgcgcgactccattctgaaggaactcaaggaccaggctgca
aatgggcaagcccaaggcctcgagccggccacagggcctcccccagagcccaagcctggg
caggatgcggtggggcgtgctggcagcgatgagcccagggctcctggccaagactcctcc
aagcagccggcaggaggggacagggagcacggagagcattcccacctccacctgttcagt
tgccacgagtgtttggaactggagaacagcaccatcgagtcagtaaagtttgcctctgca
gagaacattccagatcttccctatgaccacagcagtggtttggagggtgtcactgatgag
ctctgccccaaaagagaagagagcagagtcaacatggcgggcaaagcacccaacatccta
atctatgtgggtgccagcacccgggaagcggtgggccggctggagcaggttcgctccgtt
gtagccgactgtgtggacgtggacagctataccatctaccacctgccggaggacagcgcg
ctcagggacccgtgggccgacaactgcctcttgttggtggtcgctgccttggagcccatt
cccaaagacctgtcccagaagttcatggcctatctttctcagggagggaaggtgctggcc
ctgtcgtctccgttcacctttggtggctttcaggtgacacggaagggcacgctgcaaaag
acggtccagggcttggttttctgcaaggctgaccggagcgaggtgaggctcagcgtcctg
agcagcggctgtgtctacgaggcgggcgctggagagcatcagccctgccgactccacggc
cacctggacaccgaggacaaggacaggaccatcatgcaagtgcctttcggaagctgtgga
ggagaggccgttctttgtcaggtgcatctagaactacctccacgctctcccacagtgcaa
acccaacaagactttgatttgctcaagtcaagcaatatgagaagatacgaggtccttcag
gaaatcctgactgcccttggcatcagctgtgaggttcgacaagttcctgccttaacaccc
gtgtccttactgttggccaccgaggaaatccgagatccgcttatgcagtggctgggggca
catgtggatccagaaggagtaatcaagtccagcaagctctcccttaagtttgtgtcctct
tgtgcatctgaagtagaagtcaccccgtcttccatccctgtggttactgacacagaggac
ttctcttctgaccattttaacttagagatctatcggcaaaatctgcagaccaaacaactt
gggaaagtaattctgtttgctgaagtgaccccgaccaccatgaatcttctggatgggttg
atgtttgagatgccgcaggaaatgggtttaatcgccattgcagtccggcagacccagggc
aaagggcggggaccgaacgcctggctgagcccggtaggatgcgccctctccacgctgctg
atctccatcccgctgcggtcccagctggggcagaggattcctttcgtccagcacctgatg
tccctggcggtggtggaggccgtgcggtccgtgcccaagtatcaggatatcaacttacga
gtgaagtggcccaacgacatttattacagtgacctcatgaagattgggggagttctggtt
aactcaacacttctgggagaaacattttatatacttatcggctgcggattcaacgtcacc
aacagtaaccccacgatctgcatcaacgacctcatcgcagaacacaacaggcagcacgag
gccgggctgcagcccttccgagccgaccacctcattgccagggccgtgacggtgctggag
acactggtgcacacgttccaggatgaggggccccagggcgtgctgcccctctattacaaa
tactggctgcacagtggtcagcaggtccggctgggaagcacggaggggccgcaggtgtcc
atcgtgggcctcgacgattccggcttcctgcaggtgctcggggaggacggccggatcgtg
acggtgcaccccgacggcaactccttcgacatgctgaggaacctcattgtgcccaagcag
cagtag
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