Perognathus longimembris pacificus (Pacific pocket mouse): 125355601
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Entry
125355601 CDS
T08928
Symbol
Vcam1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04064
NF-kappa B signaling pathway
plop04514
Cell adhesion molecules
plop04668
TNF signaling pathway
plop04670
Leukocyte transendothelial migration
plop04933
AGE-RAGE signaling pathway in diabetic complications
plop05143
African trypanosomiasis
plop05144
Malaria
plop05417
Lipid and atherosclerosis
plop05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
125355601 (Vcam1)
04668 TNF signaling pathway
125355601 (Vcam1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125355601 (Vcam1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
125355601 (Vcam1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
125355601 (Vcam1)
05143 African trypanosomiasis
125355601 (Vcam1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
125355601 (Vcam1)
05418 Fluid shear stress and atherosclerosis
125355601 (Vcam1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125355601 (Vcam1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
plop04090
]
125355601 (Vcam1)
04091 Lectins [BR:
plop04091
]
125355601 (Vcam1)
CD molecules [BR:
plop04090
]
Proteins
125355601 (Vcam1)
Lectins [BR:
plop04091
]
I-type lectins (Siglecs)
125355601 (Vcam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
C2-set
Ig_2
V-set
C2-set_2
ICAM_N
Ig_5
Ig_4
Ig_6
ICAM1_3_5_D2
C1-set
TrkA_C
INCA1
DUF6180
Motif
Other DBs
NCBI-GeneID:
125355601
NCBI-ProteinID:
XP_048208006
LinkDB
All DBs
Position
7:82020546..82040348
Genome browser
AA seq
739 aa
AA seq
DB search
MPGKMVAIFGASILLWIVFAASQAFKIETSPDSRTLAQIGDSVSLTCSTTGCKSPSFSWR
TQIDSPLNAKVSNERTKSTLTMDPVSFDNEHSYLCTATCGSGKLEKGIQVEIYSFPKDPE
IYLSGPVEVGKSITAQCVVPDVYPFDRLEVDLLKGDHLMKNKEFLEDMERKSLETKSLEV
TFTPVIEDIGKVLVCRAKLHIDEMDSVPKERKTTEKLQVYISPQNTVISVQPSTRLQEGD
SVTMTCSSEGLPPPEIFWSKKLENENLQPLSGNSTLTLIAMRIEDSGIYVCEGANLIGRQ
RKEVELIVQEKPFTMDISPGPRVFAQIGDSVVLTCSVTGCESPSFSWRTQIDSPLSGQVR
SARAKSTLTLSSVSFENEHSYLCMATCGPKKQEKGIQVELYSFPRDPEIEMSGLLVSGSP
ITVNCTVPNVYPFDHLEIELLKEGTILTTKHFLEGMDRKSLKTKSLDMTFTPTTEDTGKA
LVCLAKLHVGEMESEPKQRHSTQTLYVNVAPKDTTVLVSPSSILEEGSSVNMTCFSDGFP
DPKILWSRQLSNGALQPLSENTTLTFISTKMEDSGIYVCEGINQAGISRKEVELIVQVFP
KDIQLTAFPSESVKEGDTVIISCTCGNVPETWIILKKKSVTGDTVLRSIDGAYTIRKAQL
EDAGVYECEWKNKVGSQLRSLTLDVKERENNKDSFSPELLVLYCASSLIIPAIGMTIYFA
RKANMKGSYSLVDAQKSKV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggaagatggttgcaatctttggagcctcaattttactttggatagtgtttgca
gcttctcaagcttttaaaattgagacctcccctgactccagaactctcgctcagattggt
gactctgtctcgttgacttgtagcacaacaggctgcaagtccccatctttttcctggaga
acacagatagacagtccactaaatgccaaggtgagcaacgagaggaccaagtccacactg
accatggatcctgtgagcttcgacaatgagcactcttatctatgcacggcaacctgtgga
tctgggaaactggaaaagggaattcaagtggagatctactctttccctaaggatccagag
atttacctgagtggccctgtggaggttggaaagtcaatcaccgcccagtgtgtggtccct
gatgtgtacccctttgacaggctggaggtggatttactgaaaggcgatcacctcatgaaa
aacaaggaatttctggaagatatggagaggaagtctctggaaaccaagagtttggaagtg
acctttacccctgtcattgaggatattggaaaagttcttgtttgccgagctaaattacac
attgatgaaatggattctgtacccaaagaaaggaagactaccgaaaagctgcaagtctac
atctcaccccaaaacacagtcatctctgtgcagccctccacaaggctgcaagaaggagac
tctgtgaccatgacctgctccagtgagggtctaccgcctccagaaattttctggagcaag
aaactagagaatgagaatctgcagccactctctgggaattcaactctaaccttaattgct
atgaggatagaagattctggaatttatgtgtgtgaaggagctaatctgattgggagacaa
agaaaagaagtggaattaattgttcaagaaaaaccatttaccatggacatctctcctggc
ccgagggtttttgcccagattggggactcagtggtgctgacgtgttcagtcacaggctgt
gagtctccatcgttctcctggagaacgcagatagacagccctctgagtgggcaggtgaga
agtgccagagccaagtccaccctgaccctgagctctgtgagtttcgagaatgagcattct
tacctgtgcatggcgacctgcgggcctaagaaacaggaaaaggggattcaggtggagctc
tactccttccctagagatccagaaattgagatgagtggcctgcttgtgagtgggagtccc
attactgtgaactgcacagttcctaatgtatacccttttgatcatttggagattgaatta
ttgaaggaaggaacaattttgacaactaaacactttttggagggaatggacaggaaatcc
ctgaagaccaaaagtttggacatgaccttcacccctaccactgaagatactggaaaagct
cttgtttgtctggccaagttacatgtgggtgagatggaatctgaacccaaacaaaggcac
agtacacagacgctgtatgtcaatgttgcccccaaggacactactgtcttggtcagcccc
tcctccatcctggaggagggcagttctgtgaatatgacatgcttcagtgatggcttccca
gatcccaaaattctgtggagcagacagctgagcaacggagctctccagcctctttctgag
aatacaactctgaccttcatttctacaaaaatggaagattctggcatttatgtatgtgaa
gggattaaccaggctggaataagtagaaaagaagttgagttaattgtacaagtttttcct
aaggacatacaactgacagcttttccttctgagagtgtcaaggaaggagacactgtcatt
atctcctgtacctgtgggaatgttccagaaacttggataatcctgaagaaaaaatcagtg
acgggagacacagtcctgaggtccatcgatggcgcgtacactatccgcaaagctcagttg
gaggatgcaggcgtgtacgagtgtgaatggaagaacaaagtgggatcccagttaagaagt
ttgacactggatgttaaagaaagagaaaataacaaagactctttttctcctgaacttctg
gtactctattgtgcatcctccctcataatacctgctatcggaatgaccatttactttgca
agaaaagccaacatgaaaggatcatacagtcttgtagatgcacagaaatcaaaagtgtag
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