Perognathus longimembris pacificus (Pacific pocket mouse): 125356084
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Entry
125356084 CDS
T08928
Symbol
Polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125356084 (Polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125356084 (Polr1b)
Enzymes [BR:
plop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125356084 (Polr1b)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125356084 (Polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
SVA
Motif
Other DBs
NCBI-GeneID:
125356084
NCBI-ProteinID:
XP_048208315
LinkDB
All DBs
Position
8:3137812..3160379
Genome browser
AA seq
1135 aa
AA seq
DB search
MDSGGRWAHLPRGPSLKHLTAPSYRVPPERQKAALQDLTRAHVDSFNYAALEGLGHAVRA
IPPFEFAFKDERISLTIVDAVITPPTVPKGAICKELNIYPAECRGRRSTYRGKLTADISW
AVNGITKGVIKQFLGYVPIMVKSKLCNLHGLSPQALIEHHEEAEEMGGYFIINGIEKVIR
MLIMPRRNFPIAMVRPKWKSRGPGYTHFGVSMHCVREEHSAVNMNLHYVENGTVTLNFIY
QKELFFLPLGFALKALVNFSDYQIFQELIKGKEDDSFFRNSVSQMLRMVMEEGCSTQKQV
LNYLGECFRVKLNLPDWYPNEQAAEFLFNQCICIHLNTSTEKFYQLCFMTRKLFALARGE
CMEDNPDSLVNQEVLTPGQLFLRFLKEKMETWLVSIKIALDKRAQKTNVSINSENLMKIF
SMGADLTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQSVYTTSIPALLCSLGVT
PVDGAPHRPYGECYPVLLDGVLVGWVDKDLAPGVEGSLRHFKVLREKKIPPWMEVVLIPM
TGKPSLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVLAGITTHQE
LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP
LVRPFMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGTVYKSEFID
LSEKIKQGDDSLVFGVKPGDARIVQKLDDDGLPFIGAKLQHGDPYYSYLNLNTGESFVVY
YKSKENCVVDNIKVCSNDSGNGKFKCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAE
DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENPALQ
CFGEMLKAAGYNYHGTERLYSGISGAELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK
VTNQPVGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPL
LEKPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVM
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggactccggaggccggtgggcgcacctgccccgcgggcccagcctgaagcacctgacg
gcgccctcttaccgggtcccgccggagcggcagaaggcggcgctgcaggacctgacgcgc
gcgcacgtggactcgttcaactacgcggcgctggaggggctcggccacgcggtgcgggcg
atccctccctttgaatttgctttcaaagatgaacggatctccctcactattgtggatgct
gtcatcactccacccaccgttccaaaaggtgccatctgcaaagagctcaacatctatcca
gcggagtgccgaggccggaggagcacctaccgcgggaagctgaccgctgatatcagctgg
gcggtgaatggaatcacaaaaggagtcattaagcagtttcttggctacgtccccatcatg
gtgaagtccaagctttgcaacttacacggcctttctccgcaagccctgatcgagcatcac
gaggaggcagaggaaatgggaggctatttcattatcaatggcattgagaaagtcatccgc
atgctgatcatgcctcggaggaatttccccattgccatggtgagaccgaaatggaaaagc
cgaggcccgggctatacacactttggagtctccatgcactgtgtgagggaggagcactct
gctgtcaatatgaaccttcactatgtggagaacggcaccgttaccttgaacttcatttac
cagaaggaactgttttttcttcctttgggatttgcacttaaggcacttgtcaacttttct
gactatcagattttccaggagctcatcaaaggaaaagaggacgactctttctttcggaac
tctgtttcccagatgttgaggatggtgatggaggagggttgttccacacagaagcaggtc
cttaactatctgggagaatgcttccgagtaaaactcaaccttcccgactggtaccctaat
gagcaagctgccgagtttctgtttaaccagtgcatctgcatccacttgaacaccagtacc
gaaaagttttaccagctctgtttcatgacccgaaagctctttgctttagccagaggagag
tgcatggaggacaatcctgacagtttagtgaatcaagaagtcctcacgcctggccagctc
ttcctcaggtttctcaaggaaaaaatggaaacttggttagtgtctattaaaatagcttta
gataaaagggctcagaaaaccaacgtgtccataaacagtgaaaatttgatgaagattttt
agcatgggagcagacctcacaagaccatttgaatatctccttgctactgggaatctgcgt
tcgaaaacaggtcttggcttcctgcaagattctggcctgtgcgtcgtggctgacaagctg
aacttcatacgctatctctcccatttccgctgtgtgcacagaggagccgctttcgccaag
atgaggaccaccaccgtccgcaggctgctgcccgagtcctggggcttcctttgtcctgtg
cacaccccggacggggagccctgcgggctgatgaaccacctaactgccatatgcgaggtc
gtcacccagtctgtgtacacaacgtccattcccgccttgctctgcagcctgggagtcacc
ccagtagatggagccccccaccggccctacggcgagtgctaccctgtcctgctggatggt
gtcttggtgggatgggtggataaggaccttgcccctggcgttgaaggttctctgcggcat
tttaaggtattaagagagaaaaagatccctccctggatggaggtggtccttattcccatg
acaggaaagccgagtctgtaccccgggctgtttctcttcaccaccccttgcagactggtg
cggcctgtgcagaacttggagctaggccgggaagaactgatcggaaccatggaacagctc
ttcatgaacgttgcgatctttgaagacgaggttcttgcgggcattaccacgcaccaggag
ctcttcccccacagcctgctgagtgtgatagccaacttcatccccttctctgaccacaac
cagagtccccggaacatgtaccagtgccagatgggtaaacagactatgggctttccactt
ctcacttaccaagaccgatctgataataaactctaccgtcttcagactccccagagccct
ttagtgaggccattcatgtacgactattatgacatggataactatccaatagggaccaac
gctatcgtcgctgtgatttcttacactggctatgacatggaagacgccatgattgtgaac
aaggcttcctgggagcgtggttttgcgcatggaactgtctacaagtcagagttcatagac
ctctctgaaaagatcaaacaaggagatgatagccttgtgtttggggtcaaacctggtgac
gcacggattgtgcagaagttggacgacgatggattgccattcataggagcaaagctgcaa
cacggagacccctattacagctacctaaacctcaacactggggagagcttcgtggtttac
tataagagtaaagagaattgcgtagtggataacatcaaggtgtgcagcaacgactcgggg
aacgggaagttcaagtgcatctgcattaccatgcgggtcccccggaacccgacgatcgga
gataagtttgccagtcgtcacgggcagaagggcattttgagcagactgtggcccgctgag
gacatgcctttcactgagagtgggatggtgcccgacattctcttcaaccctcacggtttc
ccgtcgcgcatgaccatcggcatgctcatcgagagtatggccggcaagtctgccgctctg
catgggctctgccatgacgccactcccttcaccttctcggaggagaacccggccctccag
tgcttcggtgagatgctgaaggcggccggttacaactaccacggcactgagaggttgtac
agtggcatcagtggggcagaactggaagcagacattttcataggtgtagtttattaccaa
cgcttgcgccacatggtatctgacaaatttcaagttcggacaactggagccagggacaaa
gtcaccaaccagccagtcgggggaagaaatgtccagggcggaatccgttttggggagatg
gagcgggatgctctcttggctcatggaacatcttttcttcttcacgaccgcctcttcaac
tgctctgaccgctcagtcgctcacgtgtgtgtcaagtgcggcagtctgctctctccactg
ctggagaagccacccccttcttggtctgccatgcggaaccggaagtacaactgcacgctg
tgtaatcgcagcgacaccattgacactgtttctgtgccttacgttttccggtattttgta
gctgaactggcagcaatgaacatcaaagtgaaactggatgtcatgtag
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