Perognathus longimembris pacificus (Pacific pocket mouse): 125356465
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Entry
125356465 CDS
T08928
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop01524
Platinum drug resistance
plop03430
Mismatch repair
plop05200
Pathways in cancer
plop05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125356465 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125356465 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
125356465 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
125356465 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plop03400
]
125356465 (Msh6)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125356465 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
125356465
NCBI-ProteinID:
XP_048208927
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Position
8:complement(45467257..45484452)
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AA seq
1365 aa
AA seq
DB search
MSRQSTLFSFFSKSPALNNAKKAGASSEGRGAAATGASPTLGEDASGSEPGPEPGPQAVE
SSPPEAKNLNGRLTNSASPAAPASSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIR
EKGKSARVHVQFFDDSPTRGWVNKRLLKPYTGSKSQEAQKGGHFYSSKAEILRAMQRADE
ALNKDKIKRLEMAVCDEPSESEEEATEVGATYTSDNSEEKDSEGEMQPQKLRRSSRLVKK
LRVISDSESGGDSDVDFKPDAKEEGSSDEISSGMGDSESDGMSSPVKVAPKRKRMVTGSS
TFKKKTSKETPAKVLKEPPTKVSKEIPATTKCMTGILGNKVILSGFSASHNSESQVRVSG
GDDSSPPTVWYHETLEWLKKEKRRDARRRWPDHPDFDASTLYVPEDFLNSCTPGMRKWWE
IKSQNFDLVIFYKVGKFYELYHMDAVIGVNDLGLVFMKGSWAHSGFPEIAFGRYSDSLVQ
KGYKVARVEQTETPEMMEARCRKMAHISKFDRVVRREICRIITKGTQTYSVLEGDPSEKY
SKYLLSLKEKEEDFSGHNHVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVL
FEKGNLSTETKTILKGSLSSSLQEGLVPGSQFWDATKTLKTLLEEGYFTEKLSEGNGVAL
PQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCCIDQELLSMANFEEYIPLDSD
MVSTTKPGALFTKANQRMVLDAVTLSNLEIFLNGTNGSTEGTLIERIDTCYTLFGKRLLR
QWLCAPLCSPSAINDRLDAIEDLMVLPDKISEVADLLKKLPDLERLLSKIHNVGFPLKNH
NHPDSRAIMYEETTYSKKKIIDFLSALEGFKIMCKIIEIMGEVTESLKSKILKQIVTLQT
KDPVGRFPDLTAELNRWDTAFDHEKARKTGLIIPKAGFDTDYDQALADIRENEQSLLEYL
EKQRTRLGCRNIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKL
ANLINAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSQGGDGPMC
RPVILLPGEDTLPFLEFKGSRHPCITKTFFGDDFIPNDILIGCEDEEENSKAFCVLVTGP
NMGGKSTLIRQAGLLAVLAQLGCFVPAEVCRLTPVDRVFTRLGASDRIMSGESTFFVELS
ETASILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED
YSKNISVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQK
GHRKAREFEKMNQSLRLFREVCLVSERSTVDAEAVHKLLTLIKEL
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcagagcaccctgttcagcttcttctccaagtctccggcgctgaataatgcc
aagaaggcaggggcctctagcgaaggtcgcggtgccgccgccactggggcctcccctacc
ctcggcgaagatgcgtccgggagcgaacctgggcctgagcccgggccccaggcagtcgag
tcgtcgccgccggaagcaaagaatctcaatggaaggctgacgaactcggcttcgccggcg
gcgccggccagcagttcctgtgacttctcaccaggtgatttagtttgggccaagatggag
ggatatccctggtggccttgcctggtttataaccatccctttgatggaacattcatccga
gagaaagggaaatcagcccgtgttcatgtgcagttttttgatgacagcccaacaaggggc
tgggtcaacaaaaggctattaaagccatatacaggttcaaaatcacaggaagcccaaaag
ggtggtcatttttatagttcaaaggctgaaatactcagagcaatgcaacgggcagatgaa
gccttaaataaagacaagattaaaagacttgaaatggcagtgtgtgatgagccctcagag
tcagaagaggaagcaacagaggtaggtgcgacctatacatcagataacagtgaagaaaag
gacagtgaaggtgaaatgcagcctcagaagctgaggagaagtagccggctagtaaaaaaa
ctaagggttatatccgactccgagagtggtggtgattctgatgtggatttcaagcccgat
gctaaggaggaaggtagcagtgatgaaatcagtagtggaatgggggatagcgagagtgat
ggtatgagcagccctgtcaaagttgctccaaagcggaaaagaatggtgactggaagcagt
acatttaaaaagaaaacttcaaaggaaacacctgcaaaagttttgaaggaaccacccaca
aaggtttcgaaggaaatacccgcaaccaccaaatgcatgactggaattttgggaaacaag
gtcatattgagtggtttttctgcctctcataattctgaatcccaagtccgtgttagtgga
ggtgatgacagcagcccccctactgtatggtatcatgaaactttagaatggcttaagaag
gaaaaaagaagagatgcacgcaggaggtggcctgatcacccagattttgatgcatccacc
ctttatgtgcctgaagattttcttaactcctgtactcctgggatgaggaagtggtgggag
attaagtctcaaaattttgatcttgtcatcttttataaggtggggaagttctatgaactg
taccatatggatgctgtaattggagtcaatgaccttgggctggtgttcatgaaaggcagt
tgggctcattctggttttcctgaaatagcatttggccgatactcagattccttggtgcaa
aagggctataaagtagcaagagtggaacagactgaaactccagaaatgatggaagcaaga
tgccggaagatggcacatatatctaagtttgatagggtggtaaggagggaaatttgtagg
atcattaccaagggtacacagacttacagtgtcctggaaggtgatccctctgagaagtac
agtaaatatcttcttagtctcaaagaaaaagaggaagatttttctggccacaatcatgta
tatggagtatgctttgtcgatacttcactgggaaagtttttcataggtcagttttcagat
gatcgccattgttctagatttaggactctagtagcacattatcctccagtacaagtcttg
tttgaaaaaggaaatctttcaacagaaactaagacaattctgaagggttcattatcatct
tctcttcaggaaggtctggtacctggctcccaattttgggatgcaactaaaactttaaaa
acactccttgaagaaggatattttactgaaaagttgagtgaaggcaatggagttgcatta
ccccaggtgcttaaaggtatgacctcagagtcagattccattggattgacaccaggagag
aaaagtgaactagccctctctgctctaggtggttgtgtcttctacctcaaaaaatgctgt
attgatcaggaacttttatccatggcaaattttgaagagtatattcctttggattctgac
atggtcagtactacaaaacctggtgctctctttactaaagccaatcaacgtatggtgcta
gatgcagtgacattaagcaacttggagattttcctgaatgggacaaatggttctactgaa
gggaccctgatagaaaggattgatacctgctatactctctttggaaagcggcttctccga
caatggctttgtgccccgctctgtagtccctctgccatcaatgatcgcttagatgccata
gaagacctcatggtactacctgacaaaatctccgaggttgcagaccttctaaaaaagctt
ccagatcttgagaggctcctgagtaaaattcataatgttggatttcccttaaagaaccat
aaccacccagacagcagggctatcatgtatgaagaaaccacatatagtaaaaagaagata
attgattttctttctgctctagaaggattcaaaataatgtgtaaaattatagagattatg
ggagaagtcactgaaagtcttaagtccaaaatccttaagcagattgtgactctacagaca
aaagatcctgtaggccgctttcctgacttgactgccgaactgaaccgatgggatacggcc
tttgaccatgaaaaggctcgaaagactggattgatcattcccaaagcaggatttgacact
gattatgaccaagcactcgctgacataagagaaaatgaacaaagcctcctggagtactta
gagaaacagcgcactcgacttggctgtaggaatattgtctattgggggatcggtaggaac
cgttaccagttggaaatccctgagaacttcaccacccgtaatctgccagaagaatatgaa
ttgaaatctaccaagaaaggttgtaaacgatactggacaaaaactattgagaaaaagttg
gctaatctgataaatgctgaagaacgtagagacacatcgctaaaggactgtatgcggcga
ctattctataactttgataaaaattacaaggactggcagtctgctgtagaatgcattgct
gtgttggatgttttactgtgcctagctaactatagccaagggggtgatggtcctatgtgt
cgcccagtaattctgttaccaggagaagacactctcccattcttagagtttaaaggatca
cgacatccctgcattacaaagacattttttggagatgattttattcctaatgacattcta
ataggctgtgaggacgaggaggaaaatagcaaagctttttgtgtgcttgttactggaccg
aatatgggaggcaaatccacacttataagacaggctggtctactagctgtactggcccag
ttgggttgttttgtacctgctgaagtttgtaggctcactccagttgatcgagtgtttact
agacttggtgcctcagatagaataatgtcaggtgaaagcacattttttgttgaattgagt
gaaacagccagcattcttaggcatgcaacagcacattctctagtgcttgtggatgaatta
ggaagaggtactgcaacatttgatgggacagcaatagcaaatgcagttgttaaagaactt
gctgagaccataaagtgtcgtacattgttttctacccattatcattcattagtagaagat
tattctaaaaatatttctgtgcgcttaggacatatggcatgcatggtagaaaacgaatgt
gaagatcccagccaggagacaattactttcctgtataagttcattaagggagcttgtcct
aagagctatggctttaatgcagcaaggcttgcaaatcttccagaggaagttattcaaaag
ggacatagaaaagcaagagaatttgagaagatgaatcagtcactacggttatttcgggaa
gtttgcctggttagtgaaaggtcaactgtagatgctgaagctgtccataagttgctgact
ttgattaaggaattatag
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