Perognathus longimembris pacificus (Pacific pocket mouse): 125365391
Help
Entry
125365391 CDS
T08928
Symbol
Polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03020
RNA polymerase
plop03420
Nucleotide excision repair
plop05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125365391 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
125365391 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125365391 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125365391 (Polr2a)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125365391 (Polr2a)
Enzymes [BR:
plop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125365391 (Polr2a)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125365391 (Polr2a)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125365391 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125365391
NCBI-ProteinID:
XP_048221379
LinkDB
All DBs
Position
17:complement(6915888..6963497)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagtccagacgagctgaaacggatgtctgtgacagagggtggt
ataaaatatccagaaaccaccgagggaggccgtcccaagcttggggggctgatggatccc
aggcaaggagtgattgagcggactggtcgctgccagacatgtgcaggaaacatgacagag
tgtcctggccactttggccacattgaactggccaagcctgtatttcatgtggggtttctg
gtgaaaacaatgaaggtcttacgctgtgtctgcttcttctgctccaaactgcttgtggac
tcgaacaatcctaaaatcaaggacattctggccaagtccaagggacagcccaagaagcga
ctcacacatgtgtatgacctttgcaagggcaaaaacatctgcgagggcggggaggagatg
gacaacaaattcggtgtggaacagcctgagggcgatgaggatctgaccaaagagaagggc
catggtggctgtgggcggtaccagccccgaattcggcgctcaggactggagctgtatgct
gaatggaagcatgttaatgaagactcccaggagaagaagatcttgctgagtccagagcga
gtgcatgagatcttcaagcgcatctcagatgaagagtgttttgtgctaggcatggagccc
cgctatgcccggcctgaatggatgattgtcacagtgttgccagtgccccctctttcagtg
cggcctgctgtagtgatgcagggctctgctcgaaaccaggatgacttgactcacaaactg
gctgacattgtgaagatcaacaatcagctgcgacgcaatgagcagaacggtgcggctgcc
catgtcatcgcagaggacgtgaagctcctccagttccatgtggccaccatggtggacaat
gagctgcccggcttgccccgcgccatgcagaagtctggacgtcccctcaaatccttgaag
cagcgtctaaagggcaaggaaggccgggtgcgagggaacctgatgggcaagcgagtggac
ttctcagcccgcactgtcatcactcccgatcccaacttgtccattgaccaggttggcgtg
cctcgctccattgctgccaacatgacctttgcagagatcgtcacccccttcaacatcgac
agactacaggagctggtacgcagggggaacagccagtacccaggagccaagtatatcatc
cgagacaatggcgatcgaattgacctgcgtttccaccccaaacccagtgaccttcacctg
cagacaggctataaggtggaacggcacatgtgtgatggagacattgttatcttcaatcgt
cagccaactttgcataaaatgtccatgatggggcatcgggttcgcatccttccctggtct
acttttcgtctgaatcttagtgtgacaactccatacaatgcagactttgatggagatgag
atgaacttgcacctgccacagtctttggagactagagcagagatccaggaattagccatg
gtgcctcgaatgattgtcacaccccaaagcaatcgaccagtcatgggtattgtgcaggac
acactcaccgcagtacgcaaattcacaaagagagacgtctttttggagcggggtgaagtg
atgaaccttctaatgtttctgtctacatgggatgggaaggttccacagccagccatcctt
aagccccggcccctatggaccggcaaacagatcttctccctcatcatacctggccacatc
aattgtatccgtacccacagcacccatcctgatgacgaagacagtggcccttataaacac
atctctcctggggacacgaaggtagtggtggagaatggggagctgatcatgggcattcta
tgtaagaagtctcttggtacctcagctggctccctggtccacatttcctaccttgagatg
ggtcatgacaccactcgcctcttctactccaacattcaaactgtcattaacaactggctc
ctcattgaaggtcataccattggcattggggactctattgctgattctaagacttaccaa
gacattcagaacactattaagaaggctaaacaggatgtaatagaggtcattgaaaaggct
cataacaatgagctggagcccactccagggaataccctgcgtcagacatttgagaatcag
gtgaatcgcattctcaacgatgcccgagacaaaactggctcctcggcccagaaatctctg
tctgaatataacaactttaagtctatggtggtgtctggtgctaaaggatccaagatcaac
atctcccaggtcattgctgtcgtggggcagcagaatgtggagggcaaacggatccccttt
ggattcaagcaccgaactctgcctcacttcatcaaggatgattatgggcctgagagccgt
ggctttgtggagaactcatacttggctggcctcacgcccactgagttcttcttccatgcc
atgggaggccgtgagggtctcatcgacacagctgtcaagactgcagagactggctatatc
cagcggcgactcatcaagtccatggagtctgtgatggtaaaatacgatgcaactgtgagg
aactccatcaaccaagtggtgcagctgcgctatggcgaggatggtttggcaggcgagagt
gttgagttccagaacctggccacgcttaagccttctaacaaggcttttgagaagaagttc
cgctttgattataccaatgaaagggccctgcggcgcactctgcaggaggatttggtaaag
gatgtgctgagcaatgcacatatacagaatgagctggagcgagaatttgagcggatgcgg
gaggatcgagaagtgctcagggttatcttcccaactggtgacagcaaggttgtccttccc
tgtaacctcttacgcatgatctggaatgctcagaaaatcttccacatcaaccctcgtctt
ccctctgaccttcaccccatcaaagtggtggagggagttaaggaattgagcaagaagcta
gtgattgtgaatggggatgacccactaagtcggcaggctcaggagaatgccacattgctc
ttcaacatccacctacgatccacactgtgttcccggcgcatggccgaggagttccggctt
agcggagaggcttttgactggctgcttggggagatagagtccaagttcaaccaagccatt
gcccatcctggagaaatggttggagctttggctgcacaatctcttggagagcctgccact
cagatgaccttaaacaccttccactatgctggtgtgtctgccaagaatgtgactctgggt
gtgcctcgactcaaggagctcatcaacatttccaagaagccaaagactccttcactcact
gtcttcctgctgggccagtctgctcgtgatgcagagagggccaaggacattctgtgtcgc
ctggagcatacaacattgaggaaggtgactgccaacacagccatctactatgaccccaac
ccccagagcactgtggtggccgaggatcaggagtgggtgaatgtctactatgagatgcct
gactttgatgtggcccgaatatctccctggctgttgcgtgtagaactggaccggaagcac
atgactgacaggaagctgaccatggaacagattgcagaaaaaattaatgctggttttggt
gatgacttgaattgcatctttaatgatgataatgcagagaagctggtccttcgtatccgc
attatgaacagtgatgagaacaagatgcaagaggaagaagaggtggtggacaagatggat
gatgatgtttttttgcgctgcattgagtctaacatgctgacggatatgaccttgcagggc
attgagcagattagcaaggtgtacatgcacttgccccagacggacaacaagaagaagatc
atcatcacagaggatggagagttcaaggccctgcaggagtggatcctagagacggacggt
gtgagcttgatgcgggtgctgagtgagaaggacgtggaccctgtgcgcaccacatccaac
gacattgtggagatcttcacggtactaggcattgaggccgtgcggaaagccctggagcgg
gagctgtaccatgtcatctcctttgatggttcttatgtcaattaccggcacttggctctc
ctgtgtgataccatgacctgtcgtggccacttgatggccatcactcgacatggagtcaac
cgccaggacactggaccgctcatgaaatgctccttcgaagaaacggtagatgtgcttatg
gaagcagctgcccacggagaaagcgaccccatgaagggagtctctgagaacatcatgctg
ggccagctggcccccgctggcaccggctgcttcgacctcctgctggatgcagagaagtgc
aagtatgggatggagatccccaccaacatccccggcctgggggctgctggacccaccggc
atgttcttcggctcagcacccagtcccatgggaggaatctctcctgccatgacaccctgg
aaccaaggtgcaactccagcctatggtgcctggtctcctagtgttgggagtgggatgact
ccaggcgcagctggattctctcccagtgctgcttcagatgccagtggcttcagcccaggt
tactctcccgcctggtctcctacaccaggctccccgggctccccaggcccctccagcccg
tacatcccctcaccaggtggtgctatgtctcccagctactcacctacttcacctgcatat
gagcctcgctcccctggaggctatacaccccagagtccttcctactcccccacttcgccc
tcctactctccgacttccccatcctattctccaaccagtcccaactatagccctacctca
cccagctactcgcccacatcacccagctactcgcccacatcacccagctactcacccaca
tcacccagctactcacccacatcaccaagctactcacccacatcgccaagctactcgccg
acatcgccaagctactcgccaacttcacccagctactccccgacttcacccagctactcc
ccaacatctcccagttactcgccaacatcacccagctattctcccacatcgcccagctac
tcaccgacatcgccgagctactcaccgacttcgccgagctactcaccgacttcgccgagc
tactcacctaccagccctaactactctccaaccagtcccaattacaccccaacatcaccc
agctacagcccaacgtcccccagttactcacctactagccctaactatacaccaacaagc
cccaactacagcccaacctctccaagctactccccaacttcgcccagctactccccaacc
tcaccaagctattccccttcaagcccacggtacaccccacagtctccaacatacaccccg
agctctcccagctacagccccagctctcccagctacagccctacttcacccaagtacacc
cctaccagcccttcctacagccccagctcaccggagtacaccccaacctcccccaagtac
tcacctaccagccccaaatattcacctacttctcccaagtactcgcctacaagccctacc
tactcacccaccacccccaagtactcgccaacatctcccacttactcaccaacctctcca
gtctacaccccaacctcccccaagtactcacctactagccctacctactccccaacgtcc
cccaagtactcgcccaccagtcccacctattcacccacttcccccaaaggatctacctac
tctcccacttctcctggctactcgcccaccagccccacctacagcctcaccagcccagcc
atcagcccagatgacagtgatgaggagaactga
DBGET
integrated database retrieval system
