Perognathus longimembris pacificus (Pacific pocket mouse): 125367699
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Entry
125367699 CDS
T08928
Symbol
Prdm9
Name
(RefSeq) LOW QUALITY PROTEIN: histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00310
Lysine degradation
plop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
125367699 (Prdm9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125367699 (Prdm9)
03036 Chromosome and associated proteins [BR:
plop03036
]
125367699 (Prdm9)
Enzymes [BR:
plop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
125367699 (Prdm9)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
125367699 (Prdm9)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
125367699 (Prdm9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
125367699 (Prdm9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
PRDM2_PR
zf-C2H2_4
SSXRD
zf-C2H2_5
zf-C2H2_3rep
zf-C2H2_11
SET
KRAB
Zn-ribbon_8
zf-C2H2_2
zf-H2C2_5
Motif
Other DBs
NCBI-GeneID:
125367699
NCBI-ProteinID:
XP_048224360
LinkDB
All DBs
Position
19:81684..99118
Genome browser
AA seq
893 aa
AA seq
DB search
MSIPDSSLEDSPEEEAGRPGCKPKVKDAFKDISMYFSKEEWTEMGEWEKIHYRNMKRNYN
MLISIGLKAPRPVFMCHRRQAIKPQVDDTDDSDEEWTPRQQVKSPWVTFRTEQSKHQNQK
GMPKTPLGKKPSLKKFSGITNVLKTSGLEQVQTVSPPGEASTYRQHYKQNLGPRTKEVKM
RMYSLRERKGYTYEEVSEPQDDDYLYCEQCQNFFINSCIVHGPPIFVTDNVVDREHYDRS
VLSLPPGLRIRQSSIPEAGLGVWNEECDLPLGLHFGPYEGQITEDEDVANSGYSWMITKG
RNCYVYVDGKDKSQANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIKAGCELLVWYG
DEYGQELGIKWGSKWKKELTAETEHKLEIHPCPLCSLAFSSQKFLSQHMEHSHHSQTFLR
TSFRKNFQPWDPYQGDQLQEQQHLYNQNDKVADQEIKGSSKPTHKNTTHGVISRAFSSTP
KGQVGRPGGTEKTMDEELRTVQKVNPDAASKLFVKAGISRIVPVKNDKSNIKHQPTHTGE
KPYVCRECGRGFTWKSDLTRHQRTHTGEKPYVCGECGRGFTWKSDLTGHQRTHTGEKPYV
CRECGRGFTWKSDLTRHQRTHTGEKPYVCRECGRGFTLKSHLTGHQRTHTGEKPYVCREC
GRGFTVKSHLTQHQRTHTGEKPYVCRECGRGFTWKSDLTRHQRTHTGEKPYVCRECGRGF
TVKSHLTRHQRTHTGEKPYVCRECGRGFTLKSHLTGHQRTHTGEKPYVCRECGRGFTVKS
HLTGHQRTHTGEKPYVCRECGRGFTQKSHLTQHQRTHTGEKPYVCGECGRGFTVKSHLTW
HQRTHTGEKPXACRECEQGFRLKSSFREHRRAHTEQAKPLLNNHRNDKCSTSR
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcccagatagttccctggaggacagcccagaggaagaggcaggaagacctgga
tgcaagcccaaggtcaaagatgctttcaaagatatttccatgtacttttccaaggaagaa
tggacagaaatgggagaatgggagaagatccactatagaaatatgaaaagaaactacaat
atgctgatttctataggtctcaaagccccacgaccagttttcatgtgtcaccgaaggcaa
gccatcaaacctcaggtggatgacactgatgattctgatgaagaatggacacctagacag
caagtcaaatctccttgggtgaccttcagaaccgaacagagtaagcatcagaatcagaag
ggaatgcctaagacaccattaggtaagaaacccagtttgaagaagttctcaggaattaca
aatgtgctgaagacaagcggattagaacaggtccagacagtgtcccctcctggagaagca
agtacctatagacagcactacaaacaaaatttgggacccaggacaaaggaggtaaaaatg
aggatgtacagcctgcgagaaagaaagggttatacttatgaagaggtcagcgagccccag
gatgatgactatctctattgtgagcagtgtcagaacttcttcatcaacagctgcattgtt
catgggccacctatatttgtaacagacaatgtggtggacagggagcactatgaccgttca
gtcctcagtctgccccctgggctgagaattcgacaatctagtattcctgaggctgggctt
ggagtatggaatgaggaatgtgatctaccattgggtctgcactttggcccctatgagggc
cagatcacagaagatgaagatgtagccaatagtggatactcctggatgatcacaaagggg
agaaattgctatgtgtatgtagatggaaaggataaatcccaggccaactggatgaggtat
gtgaactgtgcccgagatgatgaggagcagaacctggtggcctttcagtaccacaggcaa
atcttctaccgaacctgccgtgtcatcaaggcaggctgtgagctgctcgtctggtatggg
gatgagtatggacaggaactgggcatcaaatggggcagcaagtggaagaaagagctcaca
gcagaaacagaacacaaactggaaatccatccgtgccccttgtgctctttggccttctcc
agccagaaattcctcagtcaacacatggagcacagtcaccactcacagacctttctaaga
acatctttcagaaaaaatttccaaccatgggacccctatcaaggggatcagcttcaggag
caacaacatctatacaaccagaacgacaaagttgcagatcaagagatcaaaggaagctcc
aaacccacacataaaaacaccacacatggagttatttcaagggccttttcaagcacaccc
aaaggacaggtggggagacctggagggactgagaaaacgatggatgaagagctcagaaca
gtccagaaagtgaatccagatgctgcaagcaaattatttgtgaaagcaggaatctcaaga
attgtaccagtaaagaatgacaagtcaaatatcaagcaccagccgacacacacaggggag
aagccctatgtctgcagggagtgtgggcggggctttacatggaagtcagacctcacccgg
caccagaggacacacacaggggagaagccctatgtctgcggggagtgtgggcggggcttt
acatggaagtcagacctcaccgggcaccagaggacacacacaggggagaagccctatgtc
tgcagggagtgtgggcggggctttacatggaagtcagacctcacccggcaccagaggaca
cacacaggggagaagccctatgtctgcagggagtgtgggcggggctttacactgaagtca
cacctcaccgggcaccagaggacacacacaggggagaagccctatgtctgcagggagtgt
gggcggggctttacagtgaagtcacacctcacccagcaccagaggacacacacaggggag
aagccctatgtctgcagggagtgtgggcggggctttacatggaagtcagacctcacccgg
caccagaggacacacacaggggagaagccctatgtctgcagggagtgtgggcggggcttt
acagtgaagtcacacctcacccggcaccagaggacacacacaggggagaagccctatgtc
tgcagggagtgtgggcggggctttacactgaagtcacacctcaccgggcaccagaggaca
cacacaggggagaagccctatgtctgcagggagtgtgggcggggctttacagtgaagtca
cacctcaccgggcaccagaggacacacacaggggagaagccctatgtctgcagggagtgt
gggcggggctttacacagaagtcacacctcacccagcaccagaggacacacacaggggag
aagccctatgtctgcggggagtgtgggcggggttttacagtgaagtcacacctcacctgg
caccagaggacacacactggggagaagccctaagcctgcagggaatgtgagcagggcttt
agattgaaatcaagcttcagggaacaccggagggcacacacagaacaagccaagccacta
ctcaacaaccatagaaatgacaaatgtagcacatctcgatag
DBGET
integrated database retrieval system
