Papilio machaon (common yellow swallowtail): 106709044
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Entry
106709044 CDS
T05138
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03020
RNA polymerase
pmac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106709044
09124 Replication and repair
03420 Nucleotide excision repair
106709044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmac03021
]
106709044
03400 DNA repair and recombination proteins [BR:
pmac03400
]
106709044
Enzymes [BR:
pmac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106709044
Transcription machinery [BR:
pmac03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106709044
DNA repair and recombination proteins [BR:
pmac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106709044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
106709044
NCBI-ProteinID:
XP_014356182
UniProt:
A0A194RHG1
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRNARCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELMRNEQLGAAAHVLAENIRLL
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFNEDIIKELTESGYVISDLESEWEQLSKDREILRQIF
PSGESKVVLPCNFKRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGAGMYFGVGTPSMT
PLMTPWSTQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSAWSSQPGSP
GSPGPPLSPYASPAGASPSYSPTSPVYSGASPLQSNPTSPHYSPTSPSYSPTSPHYSPTS
PIYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPGYSPTSPGYSPSSPSYSPTSPVYSPTSPSYSPSSPNYTPTCP
AYSPSSPSYSPTSPAYLPSSPKYSPSSPQYSPTSQNYSPTSPSLAGGSPTYSPTSPQYSP
TSHHYSPTSPAYSHSSPQHQSSTPYSPSSPNYSPSSPNYSPSSPGYSPSSTKYSPTSTTY
TPTSPNYSPTSRVHSPASGGGTTTYSPTSPTYSPNSPSYDAGDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacgaacgattcgaaggcgcctttgcgccaagttaaaagagtgcagtttggt
atattatcacctgatgaaatccgacgtatgtccgtcacggaagggggcattcgctttccc
gaaaccatggaaggcggaaggccgaagcttggcggacttatggatccacgacaaggggtg
attgacaggaatgccaggtgtcaaacctgtgctggaaatatgaccgaatgtcctggtcac
ttcggacatatcgatttagctaaaccagtatttcatattggtttcattacaaagactata
aaaatcttgagatgtgtttgcttctactgctctaagctgcttgttagcccgacaaatcca
aagataaaagaagtagttatgaaatcaaagggacaaccgcgtaagagattgacatatgta
tatgacctttgcaaaggtaaaaatatttgcgagggtggtgaagacatggatattggcaaa
gaaggggaagaaggtaaaagagggtctggacatggtggttgtggtcactaccaaccatct
attagacgtcaaggtttagatctaactgctgaatggaaacatgcaaatgaagatacacaa
gaaaagaaaataataataacagcagagagagtgtgggagatacttaaacacatcacagat
gaggaatcatttattttggggatggatcccaaatttgccagaccggattggatgattgta
acagttttgccagtgccaccattgtcagtgagaccagctgttgtcatgtttggtgctgca
aaaaatcaagatgatttgactcataaactggctgacattatcaaggcaaataatgaattg
atgaggaatgaacagttgggtgctgcagctcatgtccttgccgaaaacattagactgtta
caatttcatgtggccacatttgtagacaatgatatgccgggcatgcctaaagcaatgcag
aaatcaggaaaacctctgaaagcaatcaaagcccggctgaagggaaaagaaggtagaata
agaggaaaccttatgggaaaacgtgtagatttttcagctcgtactgttattacacctgat
ccaaatttacgtattgaccaagtaggagtacctcggtcaattgctcaaaatttaacattc
ccagagcttgtcaccccatttaatattgacagaatgcaagagttggtcagaagaggaaat
gcccaatatcctggtgccaaatatattgtacgcgataacggggaaagaattgatcttcga
ttccatcctaaaccatcagatctacatctgcagtatgggtacaaagttgagcgacattta
agagatgatgatttggttatatttaaccggcagcctaccctccacaagatgagtatgatg
ggacacagggtgaaagtgctaccttggtcaacattccgtatgaatttaagttgtacgtct
ccttacaatgctgattttgatggagatgaaatgaatttacatgttccgcagtctatggaa
actcgtgctgaagttgaaaatattcatattacacctcgccaaattattacaccacaagcc
aataaacctgtcatgggtattgtacaagatacattaactgctgtcagaaaaatgacaaaa
agagatgtgttcctcactaaagaacaagttatgaatttacttatgttcttacctacatgg
gatggtaagatcccacagccgtgtattttgaagccacaaccactgtggactggtaaacag
atatttactttaatcattcctggaaacgtaaatatgattagaacacactcgacacatcct
gatgaagaagatgatggaccatataaatggatatcaccaggtgatacaaaagttgttgtg
gagcatggagaattgcttatgggtatcctatgtaagaaatcattgggtgcttcagcaggt
tctttgcttcacatttgtatgttggagttgggccatgaaactgctggccgattttatggt
aatattcagactgtaatcaataactggttgttactggaaggccattccattggtattggt
gacaccattgctgatccacaaacataccaagaaattcagcgtgccattgtaaaggccaaa
gatgatgtcatagaagttatccaaaaagctcataatatggaactggagccaactccaggt
aacactttgagacagacatttgaaaatcaagtaaatcgtattctaaacgacgctcgtgac
aaaactggtggttcagctaagaagtctcttacagagtacaacaaccttaaggctatggta
gttgcaggttcaaaaggttcaaatattaatatatctcaagttattgcttgtgtgggtcag
caaaacgtagaaggtaaacgtattccatttggctttcgaaagcgaacattaccacatttt
attaaagacgattacggtcctgaatctagaggctttgtagaaaattcttatcttgccggc
ttgacgccatcggagttctattttcacgctatgggtggtcgtgaaggtcttattgatact
gctgttaaaactgctgagactggatatattcaacgtcgtttgataaaggctatggagtcc
gtaatggtacattacgacggaactgttcgtaattctgtcgggcaattgatccaattacgt
tatggcgaggatggtctcgctggagaaactgtagaattccagaatttacctacagtgaaa
ctgtccaacaaagcatttgaaaagaaattcaaatttgatccttctaatgagagatacctt
aaacgaattttcaatgaagatattattaaagagttgaccgagtccggatacgtaatatct
gatcttgaaagtgaatgggaacagttatcaaaggacagagaaatattgagacaaattttc
cctagcggtgaatcaaaggtcgtacttccttgtaatttcaagagaatgatttggaatgta
cagaagattttccatattaataaaagaatgccaacagacttaagtcctattaaggtcata
caaggagtaaaagatttgttgaagaaatgtgttattgtagcaggggaagatcgcttatct
aagcaggctaatgagaatgccacccttctgttccaatgtttagtaagatcaacattgtgc
acgaaatttgtatcggaagaataccgtttgtcaagtgaagccttcgaatggcttattgga
gaaattgaaactcgtttccagcaggctcaagtaaatccaggagaaatggttggagcttta
gctgcacaatcacttggagaacctgccactcagatgacattgaacactttccactttgct
ggtgtatcatccaaaaacgtaacacttggtgtaccgcgattgaaggaaatcattaacata
tctaagaaaccaaaagcgccatctctaactgtatttctgacaggtggtgcggctcgagac
gctgaaaaagctaagaatgttctgtgcagattagaacatacaactttgcgaaaggttact
gcaaatacagccatctactatgacccagatccacaaaatacagttattgctgaagatcaa
gaattcgttaatgtttactatgagatgcctgactttgatcccaccaagatatcgccttgg
ctgttgcgtattgaattagatcgcaagaggatgacggataagaaattgactatggaacag
attgcagaaaaaattaatgcaggtttcggagatgatttgaactgcatattcaacgacgat
aacgctgagaaacttgtacttcgtataagaatcatgaataacgaagagagtaaattccaa
gataacgatgaagagactgtggacaaaatggaagatgacatgttcctacgttgtattgaa
gccaatatgttatctgacatgacactacaaggcattgaagctattgccaaagtatacatg
catttacctcaaactgaagctaaaaagcgaatcattattacagaacaaggcgaatttaag
gcaattgctgaatggctactggaaactgatggtacttcacttatgaaagtcctttccgaa
agagacgtagatccgataaggacattttctaacgacatttgtgaaatattccaagtactt
ggtattgaggctgtgcgaaagtcagtagaaaaggaaatgaatgccgtgttgcagttctat
ggtctatacgtaaactatcgccatcttgctttgctttgtgatgtgatgacagcaaagggt
cacctcatggctattacccgtcacggtattaacagacaagacactggcgccttaatgaga
tgttcattcgaagaaacggtagacgttttactagacgcagccagtcatgccgaagtggat
ccaatgagaggagtatcagaaaatataattatgggacagttgccacgaatgggcacagga
tgttttgacttactacttgatgcagaaaagtgtaaacacggaatggaaatgggaggtctt
ggagtaggaatgggtgttggtgcaggaatgtactttggtgttggaacaccgtctatgaca
ccactaatgacaccatggtctactcagaacacaccagggtatggcagcagtgtatggtca
ccgggtcaagttggcagtagtatgacccctggtggtccatcgttctcgccatctggtgca
tcggacgcttctggtctctcaccagcttacagtgcctggtcttcacagccaggttcacca
gggtcacctggaccaccactgtcaccctatgcgtcccccgcgggagcttccccgtcttat
tctccgactagtccggtttactcaggagcttctcctctacagtctaaccccacatccccg
cattactcaccgaccagtccttcatattccccaacctcaccacactattcaccgacttca
ccaatttattctccaacttccccaagttattcaccgacatcgccaggttactcgccaacg
tctccttcgtattcgccgacgtcgccaagttattcccctacttccccgagttattctccc
accagtccggcatattcacctacttctcccagttactctcccacttcgccgagttactcg
ccaacgagtccctcatattcaccaacaagtccatcttactcaccgacaagcccgggatat
tcgccgacgtctccgggatattcgccatcctctccaagctattcgcctaccagtccagtt
tatagtccaacttcacccagttattcgccatcatcaccaaattatacaccaacctgtcct
gcctattctccatcgagtccgtcttattctccgacatctccagcttatttaccatcttct
ccaaaatattcaccgtcgtcgccacaatactcgccgacgtcgcagaattattcgccgact
tcaccgtccctcgctggaggaagtcccacatattctccgacaagcccacaatattcacca
acaagccatcattattcaccaaccagcccggcgtattcacattcctctcctcagcaccag
tcgagtacaccttattccccgtcatcgcctaattattctccttcctcacctaattactcg
ccgtcgtctcctggctattcgccatcttctactaagtattcaccgacatcgactacatat
actccgacatctccgaactactcgccgacttcccgcgtgcactccccagcctcaggtggg
ggaaccactacctactccccaacttcacctacttattctcctaactctccatcgtatgat
gccggcgatgactaa
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integrated database retrieval system
