Parus major (Great Tit): 107207642
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Entry
107207642 CDS
T04864
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmaj04040
]
107207642 (SCN2A)
Ion channels [BR:
pmaj04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
107207642 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
IQCJ-SCHIP1
IQ
ATP-synt_B
Neur_chan_memb
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
107207642
NCBI-ProteinID:
XP_015490629
Ensembl:
ENSPMJG00000019121
LinkDB
All DBs
Position
7:complement(19493800..19577318)
Genome browser
AA seq
1886 aa
AA seq
DB search
MLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWN
WLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFETTVISIFNSSIGENGTFINATMT
TFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNPNYGYTSFDTFSW
AFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQN
QATMEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAAAADSRDYSGVGGIGGFSESSSEASK
LSSKSAKERRNRRKKKKQKEQSEGEEKDGEEFHKSESEDSIKKKGFRFSIEGNRLTYEKR
FSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSL
FVPHRHGERRNSNISQASRSSRTVPALPANGKMHSTVDCNGVVSLVGGPPALTSPTGQLL
PEVMIDKAATASNGTTTETDLRKRHSSSYHVPMDYLTDPSARQRAMSIASMLTNTMEELE
ESRQKCPPCWYKFANTCLIWDCCTPWLKVKHIVNLIVMDPFVDLAITICIVLNTLFMAME
HYPMTEQFSGVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELG
LANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKIASDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMC
LTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVARIQKGIDFVKR
KVREFIQKAFVRKQKVLDEIKPLEDLNNKKDSCISNHTIVDIGKNLAYLKDGNGTTSGIG
SSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDLEESKEKLNASS
SSEGSTVDIGLPPEGEQPEAEPEEVLEPEACFTEGCVRRFKCCQVSVEEGKGKIWWNLRK
TCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLL
KWVAYGFQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSR
FEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTTDERFDISQ
INNFSQCEELIQNNETARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVLD
QPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYN
AMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQAFDISIMILICLNMVTMMVETDDQSEDM
ENILYWINLVFIVLFTGEFVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAEMIEKYF
VSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGM
SNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWNNLLNPILNSGEPDCDPHKDHPG
SSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFY
EVWEKFDPDATQFIEYSKLSDFAASLDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILF
AFTKRVLGESGEMDALRIQMEDRFMAANPSKVSYEPITTTLKRKQEEVSAVIIQRAYRRH
LLRQKVKKVSCIFSQDKGKEEDDLPTKEDMIMDKLNENSTPEKTDMTPSTTSPPSYDSVT
KPDKDKYEKDKSEKEDKGKDSRESKK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcatgtgcactattttgaccaactgcgtatttatgaccatgagtaaccctcca
gactggacaaagaatgtagaatacacattcactggaatttatacctttgaatcacttatt
aaaattcttgcaaggggcttctgtttagaagattttacatttctccgagacccatggaat
tggctagatttcactgtcattacatttgcatatgtgacagagtttgtggacctgggcaat
gtctcagcgttgagaacattcagagttctccgagctttgaaaacaatatcagtcattcca
ggcctgaagactatagtgggagccctgattcagtctgtgaagaagctctcggatgtgatg
atcctgactgtgttttgtctgagtgtatttgcactgatagggctgcagctgttcatgggc
aacctgagaaataaatgcctgcagtggcctccagacaattctactttcgaaacaacggtt
atttccatctttaatagctctataggtgaaaatggtacatttattaatgcaacaatgaca
acatttaactgggatgaatacatcgaagacaaaagtcatttctacttcttggaaggacaa
aatgatgcactgttgtgtggcaatagctcagatgcaggtcaatgcccagaaggatatata
tgtgtgaaagctggtagaaaccccaactatggctacacaagttttgatacattcagttgg
gcattcttgtcactgtttcggttgatgactcaggacttttgggagaatctttaccagctg
actctgcgtgctgctgggaagacatacatgatattttttgttttggtcattttcctgggt
tctttctacctgattaacttgatcctggctgtggttgccatggcctatgaagaacagaat
caagcaacaatggaagaagcagagcagaaagaggcagaatttcagcaaatgctggaacaa
ctgaaaaagcagcaggaagaagctcaggcggcggcagcagctgcagcagctgactccaga
gattatagtggagtaggtggaataggtggattctccgaaagttcttctgaggcatcaaaa
ctgagctcaaagagtgctaaagagagaaggaatagaagaaagaaaaaaaagcaaaaagaa
cagtctgaaggcgaggagaaggatggggaagaatttcacaaatctgaatcagaggacagc
atcaaaaagaaaggtttccgattttccattgaggggaatagactgacatatgaaaagaga
ttctcttccccacaccagtctttgctgagcattcgtggctccctgttttccccaaggcgc
aacagcagaacaagtcttttcagcttcagaggtcgagcaaaagatgtaggatcagaaaat
gactttgctgatgatgagcacagcacctttgaagacaatgagagcaggagagattctctc
tttgttcctcatagacatggtgaacggcgcaacagtaacattagccaggccagtaggtca
tccagaacagtacctgcacttccagcaaatgggaagatgcacagcactgtggattgcaat
ggagtggtttctttagttggtgggccaccagctttgacatcgcctacaggacagcttctg
ccagaggtgatgattgataaagcagccactgctagcaatggcactactacagaaactgac
ttaagaaaaagacattctagttcttaccatgttcctatggactacctaacagaccctagt
gcaaggcaaagagcaatgagtatagccagcatgcttacaaacacaatggaagaactggaa
gaatccagacagaaatgtccaccatgctggtataaatttgctaacacttgcttgatttgg
gactgctgtactccctggctgaaagtcaagcacattgtaaatttgattgtgatggaccct
tttgttgatctggccattaccatctgcattgtcctaaacaccctgttcatggccatggag
cactacccaatgacagaacagttcagtggtgtgctttcagtaggaaaccttgtgtttact
ggaatttttacagcagaaatgtttctcaagataattgccatggatccttattattatttc
caagagggctggaatatttttgatggttttattgtgagtcttagtttaatggaacttggc
cttgcaaatgtagaaggattatccgtccttcgatcattcagattgcttcgagtcttcaaa
ctggcaaaatcttggccaaccctaaatatgctgattaagattattggcaactcggtgggg
gctctggggaatctgaccctggtgctggccatcatcgtgttcattttcgctgtggttggg
atgcagctgtttgggaaaagctacaaggaatgcgtctgcaaaatcgcaagtgactgtgaa
cttcctcgctggcacatgcatgactttttccactctttcctgattgtattccgagtgctg
tgtggagaatggatagaaacaatgtgggactgcatggaggttgcaggccaaaccatgtgc
cttacagtcttcatgatggtcatggtgattggaaacctagtggtattgaacctgtttctg
gccttgctgctgagctcttttagttcagacaaccttgctgctacagacgatgataatgaa
atgaacaatctccagatcgctgtggcaaggattcagaaaggcatagattttgtgaagaga
aaagtgcgggaattcatccagaaagcctttgttaggaaacagaaagttttagatgaaatc
aagcctcttgaagacctaaataataaaaaagacagctgtatttccaaccatacaatagta
gacataggtaaaaaccttgcctatctcaaagatgggaatggaactaccagtggcataggc
agcagtgtggaaaaatatgttgttgatgaaagtgattacatgtcattcataaacaatcca
agtctcaccgtgacagtgcccattgctgttggagaatcagattttgaaaatttaaacaca
gaggagttcagcagtgaatcagacctggaagaaagcaaagagaaattgaatgcatccagt
tcatcagaaggcagcacagttgatattggactacctccagaaggtgaacagccagaagca
gaacctgaagaagttctagagccagaagcttgttttacagaagggtgcgtacggagattc
aaatgctgtcaagtcagtgtagaagaaggaaaggggaaaatctggtggaatcttaggaaa
acctgctataagattgttgaacacaactggtttgagaccttcatagtcttcatgattctt
ctcagcagcggtgctctggcatttgaagatatctacatagagcaacgtaaaactatcaag
accatgctggaatatgcggacaaagttttcacctacatcttcattctggaaatgctttta
aaatgggttgcttatggctttcaaacctatttcactaatgcgtggtgctggctagacttc
ctgatcgttgatgtctctttggttagcttaacagctaatgccttgggctactcagaactt
ggtgcgattaaatcccttaggacactaagagctttgagacctctgagagccttgtcgcga
tttgaagggatgagggttgtggtgaatgccctgttaggagcgattccatctattatgaat
gtgcttcttgtttgccttatattctggctgatatttagtattatgggagtaaatctattt
gctggaaagttttactactgtgttaacactacaactgatgagagatttgatatcagccaa
attaacaactttagtcaatgtgaggagctcatacaaaacaatgaaactgccagatggaag
aatgtgaaggttaactttgacaacgtaggccttggttacctttctctgctccaagtggct
acatttaaaggatggatggatatcatgtatgcagcagtggattctcgtaatgttttggat
cagccaaagtatgaagataacctgtacatgtatctttactttgtcatctttatcatcttt
ggatcattttttaccttgaacctttttattggtgtcatcatagacaatttcaaccagcag
aaaaagaagtttggaggtcaagacatttttatgacagaagaacagaagaaatactacaat
gcaatgaaaaaattgggttcaaagaaaccacaaaagcctatacctcgaccagcaaacaaa
ttccaaggcatggtctttgattttgtaacaaaacaagcatttgatatcagtatcatgata
cttatctgccttaacatggtcacaatgatggtcgaaacagatgatcaaagtgaagatatg
gaaaacattttatattggattaacctggtgtttattgtacttttcactggagaatttgtc
ctgaaattgatttcacttcgtcattactactttactataggttggaatatttttgatttt
gtggttgtgattctctccatagtaggtatgttcttagctgaaatgattgagaagtacttc
gtatctcccacactattcagagtcatcaggcttgccagaatcggtcgaatcctgcgcctc
attaaaggcgctaagggaatccgcactctgctttttgctttgatgatgtctcttcctgct
ctgttcaacattgggctgctgcttttcctggtcatgttcatctatgccatatttggcatg
tccaactttgcctatgtcaagagggaagttgggattgatgacatgttcaactttgaaacg
tttggcaacagcatgatctgcctgtttcagatcaccacgtccgcgggctggaacaatttg
ctcaacccaatccttaacagtggggagccagactgtgacccccataaagatcatccaggg
agctctgtgaaaggtgactgtggcaacccttctgttgggattttcttctttgtcagttac
attatcatttccttcctagtagtggtgaacatgtacattgctgtgattttggagaacttc
agtgttgctactgaagaaagtgctgaacccttgagtgaggatgactttgagatgttctat
gaggtttgggagaagtttgatcccgatgcaacacaattcatagaatacagtaaattatcc
gattttgcagcttcattagatccacctcttctcatagctaaaccaaacaaagtccagctt
attgcaatggatctgcccatggtgagtggtgaccgaattcactgccttgacatcttgttt
gctttcacaaagcgtgtgctgggggaaagtggggagatggatgccctcagaatacagatg
gaagatcggtttatggcagccaatccctctaaagtctcctatgaaccaattacaaccaca
ctgaaacgaaagcaggaggaggtgtctgctgtcatcattcagcgtgcttacagacgtcac
ctattaaggcaaaaagtcaaaaaagtatcatgtatatttagtcaggataaaggtaaagag
gaagatgatctgcccacgaaagaagatatgattatggataaactaaatgagaactccact
ccagaaaaaacagatatgacaccatccacaacctccccaccttcttacgacagtgtaaca
aagccagacaaggataaatatgaaaaagacaaatcagaaaaagaagataaaggtaaagac
agcagggaaagtaaaaagtaa
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