Plasmodium malariae: PMUG01_08037900
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Entry
PMUG01_08037900 CDS
T09444
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1, putative
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmal
Plasmodium malariae
Pathway
pmal03020
RNA polymerase
pmal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMUG01_08037900 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
PMUG01_08037900 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmal03021
]
PMUG01_08037900 (RPB1)
03400 DNA repair and recombination proteins [BR:
pmal03400
]
PMUG01_08037900 (RPB1)
Enzymes [BR:
pmal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMUG01_08037900 (RPB1)
Transcription machinery [BR:
pmal03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PMUG01_08037900 (RPB1)
DNA repair and recombination proteins [BR:
pmal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PMUG01_08037900 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-GeneID:
39868361
NCBI-ProteinID:
XP_028861225
LinkDB
All DBs
Position
8:complement(1399194..1406507)
Genome browser
AA seq
2437 aa
AA seq
DB search
MTVDLNIPYSACELKRVKRLELGVLDPEIIKKISVCEIVNVDIYKDGFPREGGLNDIRMG
TIDYKTLCGTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLSILRCVCYHCGRLLCNMNN
SKVKYIEKIKVNSLRLKKLSELCQGIKVCDHSSAQEDLLHINDNSINNFYNNDLSNLNVN
QQMLLNPNCYSNIFEMVSKEDVDCGCVQPKYTREGPNLYIQFLHSSEEDIDESKRKLSAE
EALEILKRIRKEEMGILGFNSDRCIPSSLILTYIPIPPPCARPYVQYGNQRSEDDLTLKL
LDIVKTNIQLKKQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSKKPIKAIK
TRLKGKEGRLRGNIMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYD
DLKKLVERGPYEWPGARYIIRDNGTKYDLRHVRKNSERELEYGYKVERHMTDEDYILFNR
QPSLHKMSIMGHKVKILPYSTFRLNLAVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMI
VQKQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLSKEEIMSLLIWIPYWNHVIPTPAII
KPKPLWTGKQIFSMLLHFDDLDKHDNDGGNISGNSDDPLKSQGGDRNAHFDEETTHRTHH
LSRLGVNHPSSPGIMVDGMNQGGNMLFMNSVKNQGTISNDKFNNSSNSNHNNAMSRKYNG
IKINLIRDSSTSCKDDNPYCSVSDGKVIIKNNELLSGIICKRTVGSSSGSLIHILWHEMG
PDKTKDFISALQKVMNNWLEYVGFTVSCSDIIASNKILDKVKDILNKSKKEVSKIVKKAQ
RGELECQPGKSLYESFETRVNNELNCAREMAGKVASESLDERNNIFSMVTSGSKGSIINI
SQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAM
GGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYI
EDQIIDLMKLDNKEIKKLYKYNFDEEPYGKDFFLGKGGDDGKTSSSYIDYNKQNILNQEF
EELYKCKNYLCKEIFPDGDIRQHLPINMNRLIEYAKSQFPFIPLISSKVKNGDDQKIRSK
MSLDEREKKEKRRRRKRRKKKKKKEKEKEKEKNTKMCDNYGVNDVGMDDGISGSIGGSFG
SGDFPDGTINNDELMSEIKKEYESHDLANVMKSQSAYKTFRPFGEEEGAGSGRDGSGDGS
EGSSSEGSGIEDSSSDDNNGSDHGNNEYYFPGGGRTQGNVKPFGSMLRGHYEEDSSSNGM
MVDPVQVVHKVNNFLEKLVIIKQINSNDTLSVEAQNNATLLLKAHLRTYLNSKLLTQTHN
ISLKGIDWLLQEIERIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTL
GVPRLKELINIVKNVKTPSTTIYLDDIVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDP
NTTSTILEEDKIWVNEFYEFPDEDDTQYSLGEWVLRIQLTNIHVNEKKLTMKEIVYIIYS
VFSSDELDIIYTDDNSEDLILRIRVKYLNGEYNFLTDDGENANGYEEEEEEEEDYNNIAN
SFKTKKATPADTAINNNNALNQIKEEDAFSQNSSRSHRNVNNGGSTNNGSNNMHISNNNS
NDVNNAADSNNNRGVNNEGEGKQIKKGRSGAGTSAASVVVTSDKGDSDDEDDDFLFGGNQ
TRAMDENHHSSNSKRNNNYNLENMKESMNQEDAYSKLSAKTAENDLQMKSSNKSGRSGGS
GGSSSSSSTSTTSSSSNNGSGNNSSAMNNSGGLNNNSGMNNNGGMNNNSGNNPLLSKEDT
EDTFLKKLMEQCLSSLKLRGIENITKVYMREEPKITYDSDKGKFIRSSHWVLDTDGCNLE
SIFCAPLVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDV
MTQKGYLMSITRHGINRVDKGPLVKCSFEETVEILLEAAAFAQVDNLRGITENIMLGQLC
KIGTGVFDIIIDNEKLNDANQNLETIQDITSAGFTTPDSHHGITPDGLQSPIAINTLNSP
LPFSPTYNANLLSPTAPIDNSTNSNNSMNSILSPQYIQNYTDNIISPTKNDFNNLDTLKL
GGKFSPTIQSPKSPTSVIHSPFSPFDNNNQQLMDTNLLFSPKNNITNSSNNMMNNYNVFS
PKANMATNIQSPVMYSPIPMTNPMINPMMDIFSPKPHIQNNVYSPSYSPTSPTYNANNAY
YSPTSPNNNSSSGNYSSYNQSNDLTNANRKYSMISPVYSVTSPKYSPTSPQYSPTSPVPN
NPSSPQYSPYSITSPKFSPTSPAYSISSPVYDKNTAINNNHPLSPAYILQSPVQVRQHAQ
DVQMFSPVQKANVADVQNDDPFSPMPYNIDEEEMKEE
NT seq
7314 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgacctaaatatcccatactcggcatgtgaactgaagagagtgaaaaggctt
gagttgggggtgctagacccggaaataataaaaaaaataagtgtgtgtgaaatagtaaat
gtagatatatataaagatgggtttccgagggaggggggtttaaacgatataaggatggga
acaatcgattacaaaacattatgtggtacatgtaacatgaacgttaaatattgccctggt
cattttggttatatagaattagcaaaaccgatgtatcattatgggtttatgaatgtagtg
ttaagtatattaaggtgtgtgtgttaccattgtggtaggttgttatgtaatatgaataat
tcaaaggtaaaatatattgagaaaataaaagttaatagtttaagattaaaaaaattatca
gaattatgtcaaggaataaaagtgtgtgatcattcgtctgcacaagaagatttattacat
attaatgataactctattaataatttttataacaatgatttaagtaatttaaatgtaaat
cagcaaatgcttttaaatccaaattgttatagtaatatatttgaaatggtaagtaaagag
gacgtagattgtggttgtgtgcaaccgaaatatactagagaaggtccaaatttgtatatt
caatttttgcatagtagtgaagaggatattgatgaaagtaaacgcaaattaagtgcagaa
gaagcattagaaatattaaaaagaataagaaaagaagaaatgggtattttgggatttaac
tcagatagatgtattccttcatcgttaattttaacatatatacctatacctccaccttgt
gcaagaccatatgttcagtatggaaatcaaagaagtgaagatgatttaacattaaaactt
ttagatattgtaaaaacgaatatacagttaaagaaacaaacagatagaggtgctaaatca
catgtactgcaagatttgtgttcactattacaatttcatattacgactttatttgacaat
gatattccaggaatgccaattgctactactagatcgaagaaaccaattaaagcaataaag
acaagattaaaaggaaaggaaggtagattaagaggaaatataatgggtaaaagagtggac
ttttcagcaagaacagtaattacaggagatcccaatttgaatattgattatataggtgta
cctaagtcagtagcaatgacattaacattttgtgaaacagtaactccattaaattatgat
gatttaaaaaaattagttgaaagaggtccctacgaatggccaggtgcaagatatattata
agagataatggaactaaatatgatttaaggcatgtaagaaaaaactcagaaagggaatta
gagtatggatataaagtagaaagacatatgacagatgaagattatatattatttaatagg
caaccatctttacataaaatgagtataatgggacataaggtaaagatattgccttattct
acatttagattaaatttagcagtaacttctccctataatgctgattttgatggagatgaa
atgaatttgcatctagcacagtcacatgaaactcgatcagaaattaagcatctgatgatt
gtacaaaaacaaatagtttcacctcagggtaataaacctgttatgggtattgtacaagat
tctttattagccattcgtaagtttactagaagagataattttctatcaaaagaagaaatt
atgtctttgttaatttggatcccatattggaaccatgtaatccctactcccgccataata
aagcctaaacccctttggactgggaagcaaatattttccatgctgttacattttgacgat
ttggacaaacatgataatgatggtggtaatatcagcggtaacagcgatgatcccttgaag
agccaagggggggatagaaatgcgcattttgatgaagagacaacacatagaactcatcat
ctgtccaggttaggggtcaaccatccaagtagtccaggcataatggttgatggtatgaac
caggggggaaacatgttattcatgaatagcgtaaaaaaccaaggaaccataagtaacgac
aagtttaacaatagtagcaatagtaatcataacaacgccatgtcaaggaaatacaatggg
ataaagataaacctaataagagactcatctacgtcgtgtaaagatgataatccctattgt
tcagttagtgatgggaaggtaattataaaaaacaatgagttgttaagtggtatcatatgt
aaaaggactgttggttcatccagtgggtcgttaattcatatattgtggcatgaaatgggt
ccagataaaacgaaagatttcatttcggctttacaaaaagtaatgaacaattggcttgag
tatgtaggttttactgtcagttgttctgatattatagctagtaataaaatattagataaa
gtaaaagatatattaaataaatcaaaaaaggaagtgtccaaaatagtaaaaaaagcacag
agaggagaattagaatgtcaacctggaaagtctttatatgaatcctttgaaactagagtt
aataatgaactaaattgtgctagagaaatggcaggaaaagtagcatccgaaagcttagat
gaacgaaataatatatttagtatggttactagtggttcaaaagggtctataataaacata
tcacaaattatatcatgtgttggtcaacaaaatgttgaagggaaaagaattccttttggt
tttaatcatagatcattaccacattttattaaatttgattacggtccagaaagtagagga
tttgtatcaaattcatatttaagtggtttaacaccacaggaagttttcttccatgctatg
ggtggtagagaaggtattatagacactgcatgtaaaacatccgaaactggttatatacaa
aggaggttaattaaagctatggaggatgttatggtacaatatgatcgaactgtcagaaac
tcatatggtgatattattcaatttttatatggagaagatggaatggcaggagaatatata
gaagatcaaattattgatttaatgaaattagataataaagaaattaagaaattgtataaa
tacaattttgatgaagaaccatatggaaaagatttcttcttaggtaaaggaggagatgat
gggaaaacatcatcctcatatatagactataacaaacagaatatattgaaccaagaattt
gaagagttatataaatgcaaaaattatctgtgtaaagagatttttccagatggggatata
agacaacatttgcccattaatatgaacaggctaatagaatatgccaagtcccaatttcca
tttatccccctgattagtagcaaggtgaaaaatggggatgaccaaaaaattaggtcaaaa
atgagtctggacgagagggaaaaaaaggagaaaaggagaaggagaaagagaaggaaaaaa
aaaaaaaaaaaagaaaaagaaaaagaaaaagaaaagaacaccaagatgtgcgacaattac
ggtgttaatgatgttggtatggatgatggtatcagtggaagcattggtggtagctttggc
agtggtgacttcccagatggcaccataaacaacgacgaattaatgtcggaaataaaaaaa
gagtatgagagccacgatctagccaatgtaatgaagagtcagagtgcctataagacattc
cgcccattcggtgaagaggagggagcgggttctggacgcgacggtagcggagatgggagt
gaaggaagtagcagtgaaggaagcggcattgaagatagcagcagtgatgataacaatgga
agtgatcatggaaacaatgagtactacttccctggaggtggacgcacgcagggaaatgtg
aagccgttcggaagcatgttgagagggcattatgaagaagacagcagtagtaatggaatg
atggtggacccggtacaagtagtacacaaggtaaataattttctagaaaaattagttata
ataaaacaaataaacagcaatgatacgttgtcagtagaggcccagaacaatgctacattg
ttgttgaaagcgcatttaagaacatacttgaattcaaagctattgacacaaacacataat
ataagtttaaaaggaatagattggttattacaagaaattgaaaggatattttataagtcc
ttatgtcatcctggggagtgtgtaggagcattagcagctcagtctatcggtgaaccagct
actcagatgaccttaaatacatttcattttgcaggagtaggatcaaaaaacgttactcta
ggtgttccaagattaaaggaattaataaatatagtgaaaaatgtgaaaacaccttcaact
actatatatttagatgatatagtttctaacgatcagcaaaaagcaaaagacatattaacg
aaattagagtatacaacattgaaacagttaacatcgcatgcacaaataatttatgatcct
aatacaactagtactatactagaagaggataaaatatgggttaatgaattttatgaattc
ccagatgaagatgatacacaatattctttaggagagtgggtactaagaatacagttaacg
aatatacatgttaatgaaaaaaaattaactatgaaagaaattgtttatatcatctattca
gtcttctcaagtgatgaattagatattatttacacagatgataattctgaggatctaatt
ttaagaattagagttaaatacttaaatggggagtacaattttttgaccgacgatggagaa
aatgcaaatggatatgaagaggaggaagaagaagaagaagactataacaatattgctaat
tcgtttaaaacgaagaaggctactcctgctgatacagctattaataacaataacgcttta
aatcaaataaaggaagaggatgccttcagtcaaaatagcagccgttcacacagaaacgtc
aacaatggaggaagcacaaacaatggtagtaataacatgcatatctcaaacaacaatagc
aacgatgtaaataatgcagctgatagtaacaacaatcgaggggtgaacaatgagggagag
ggaaaacaaattaaaaagggacgaagtggagcaggcacatcagccgcatcagtggtggta
acatcggacaaaggggatagcgatgatgaagatgacgattttctttttggaggtaaccag
acgagagctatggatgaaaaccaccattctagtaatagcaagaggaataataattacaat
cttgaaaatatgaaagagtcaatgaatcaagaagatgcatattccaagctgagtgcaaaa
acagcggaaaatgatctgcaaatgaagagcagtaacaaaagtggcagaagtgggggtagc
ggaggaagcagtagtagcagcagtaccagtaccaccagtagcagtagtaataacggaagt
gggaacaatagcagcgcgatgaataatagcggtggtttgaacaataacagtggtatgaac
aataacggagggatgaacaacaacagcggaaataatccactgttgtcgaaagaagacact
gaagatacgtttctaaaaaagctaatggaacagtgtttgtcatcactcaaattaagggga
atagaaaacataactaaagtttacatgagagaagagccaaagattacatatgactcagat
aagggaaaatttattagaagctctcattgggtattagacacagatggttgtaatttagaa
agcattttttgtgcaccacttgtagattttaaaaaaactgtatcaaatgatatagtagaa
atatttgaagtgttaggtatagaagcagtaagaagagcattactaaaagaattacgaaca
gtaatctcttttgatagttcatatgttaattatagacacttatccatattatgcgatgta
atgacacaaaaaggatatttgatgtcaataacaagacatggaattaatagagtagataag
ggtccattagtaaaatgtagttttgaagaaacagtggaaatcttattagaagcagctgca
tttgcacaagtagataatctaagaggcataacagaaaacataatgttaggtcaactatgt
aaaataggtactggtgtatttgatataattattgataatgagaaattaaatgatgcaaat
caaaatttagaaactattcaagatataacaagtgcaggttttacaactcctgatagtcat
catggtataacaccagatggtcttcaatcacctatagctataaatacattaaattcgcct
ttaccattttcccctacatataatgcgaatttgttatcaccaactgcaccaatagataac
agtacaaatagtaataatagtatgaatagtatattatcaccacagtatatacaaaactat
actgataatattatctcacctacgaaaaacgatttcaataatttagatactttaaaatta
ggggggaaattttctccaactattcaatcgccaaagtctccaacatctgttattcattct
cctttttctcctttcgataataacaatcagcagttaatggatactaatttattattttct
cccaaaaataatattacaaatagtagtaataatatgatgaataattataatgttttttct
ccaaaggctaatatggctaccaatattcagtcaccagttatgtattcaccaattcctatg
acaaaccctatgataaaccccatgatggacattttttctccaaaacctcatatacagaac
aatgtatactctccttcttattctccaacatctcctacatataacgcaaataatgcgtat
tactccccaacctctccaaacaataacagtagtagcggtaattatagcagttataaccaa
tcgaatgatcttaccaatgccaatagaaaatatagtatgatatcccctgtatattcagtc
acttcgccaaaatattcccccacctcgcctcaatattctccaacatctcctgtacctaac
aacccaagtagtcctcaatattctccttattcaattacctccccaaaattttctccaaca
tctccagcctattctattagttctcctgtatacgacaaaaatactgctattaataataat
catcctttatctccagcatatattctacagtcacctgtacaggtaagacaacatgcacaa
gatgttcaaatgttttccccagttcagaaagcgaatgttgcggatgtgcaaaatgacgat
ccgttttctcccatgccgtataacattgacgaggaggaaatgaaggaggaataa
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integrated database retrieval system
