Pecten maximus (king scallop): 117343689
Help
Entry
117343689 CDS
T07399
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117343689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117343689
Enzymes [BR:
pmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117343689
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117343689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
TniB
CbiA
ATP_bind_1
nSTAND3
AAA_16
AAA_22
AAA_10
AAA_24
Sigma54_activat
AAA_18
GTP_EFTU
ABC_tran
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117343689
NCBI-ProteinID:
XP_033762041
LinkDB
All DBs
Position
15:complement(34556226..34573616)
Genome browser
AA seq
431 aa
AA seq
DB search
MAEEKKDASMRTEEYKLEAVSELRFEVETGSGASVQLDLLEGMAEVFGAELTKGRQITFE
EGAKVAVFTWHGCLIKLSGKTEVAYIAKETPMVMYINTHAALEQMRQKAEKEKTRGPRVM
VVGPTDVGKSTLCRLLLNYASRLGRAPIFVDMDVGQGEISIPGTIGSIVVERPSDIEEGY
NLNAPLVFHFGSATPSQNIQLFKLLVSKMADTVNQKCDQSRKCCASGVIINTGGWVRGGG
YDMLKHTAGCFEVDVIIVLDQERLYTELKRDMPDFVEVLLLPKSGGVVERNSSVRADDRD
AKVREYFYGLRKDNKDSFYPHPLHISFNEVKIYKIGAPALPDSCLPLGMKSQDNMLKLMP
VTPSNSLLHHVLSISMANTVEDNILESNILGHVVITGVDLEKQMFTALSPSAVTPPRNIW
IMSEIQFMDIE
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggagaaaaaggatgctagtatgcgaacagaggagtacaagctagaggcagtt
tcagagcttaggtttgaagtggagactggctctggtgcgagtgtacaactggatcttcta
gaaggaatggctgaagtgtttggtgcagaacttactaaagggagacaaatcacatttgaa
gagggtgcaaaagtagcagtgtttacctggcatgggtgtctcatcaaactatcaggtaaa
actgaggtagcatacatcgccaaggagaccccaatggtgatgtacattaacactcacgct
gccctggaacagatgagacagaaggcagagaaggagaaaacacgaggaccaagggttatg
gtggtaggacctacagatgttggtaaaagtaccctgtgtcgtctgctcctcaactacgca
tcaagacttggacgtgcaccgatctttgttgacatggatgtaggacagggagaaatttct
atccccggaacaataggcagcatagtggttgagagaccttcagatatcgaggagggatac
aaccttaatgctcccttagtgttccattttggaagtgccaccccttcacagaacatccag
ctcttcaaactgctggtgtcaaagatggctgacacggtgaaccagaagtgtgatcagagc
aggaaatgctgtgctagtggggtgattatcaacactgggggctgggtgagaggaggtgga
tatgacatgctgaaacacactgctggctgctttgaagttgatgttataatcgtgttggac
caggagcgactgtacacggaacttaaacgggatatgcctgactttgtggaggtccttctt
ctacccaagtctggaggggtggtggagagaaattccagtgtcagggcagatgatcgggac
gcaaaggtgcgagagtatttctatggtctccgcaaggacaacaaagacagtttttaccct
catccgctacacatcagctttaacgaagtcaagatttacaaaataggagctccagcactg
cctgactcctgtctacctttggggatgaagtcacaagacaacatgctgaagctcatgcct
gttacaccaagtaatagccttttacatcatgtcctgagtatcagtatggctaacacagtg
gaggataatatcctggagtcaaacattttgggacatgttgtcattactggtgtcgacttg
gaaaagcagatgtttacagcgctgtctccgtccgccgtcaccccacctcgtaatatctgg
atcatgtctgagatccagtttatggatattgagtga
DBGET
integrated database retrieval system
