Paramacrobiotus metropolitanus: 129586423
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Entry
129586423 CDS
T09028
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmeo
Paramacrobiotus metropolitanus
Pathway
pmeo03020
RNA polymerase
pmeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129586423
09124 Replication and repair
03420 Nucleotide excision repair
129586423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmeo03021
]
129586423
03400 DNA repair and recombination proteins [BR:
pmeo03400
]
129586423
Enzymes [BR:
pmeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129586423
Transcription machinery [BR:
pmeo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129586423
DNA repair and recombination proteins [BR:
pmeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129586423
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
129586423
NCBI-ProteinID:
XP_055335643
LinkDB
All DBs
Position
Unknown
AA seq
1777 aa
AA seq
DB search
MAVAALTMDSSAPIRTVKRVQFGILSPDEIRAMSASEGGIKYPEIYEQGRPKLNGLMDPR
LGTVDRMMRCQTCAGNMTECPGHFGHIDLAKPVFHVGFLTKTIKVLRCVCFTCSRLLVNP
ETDAMKRAIALSKGNPKKRLQVVYDICKSKSICEGGAELDAKKPDDGDGAPEDATKKKTG
FSGCGRYQPRIKRSGLDLFGEWKNLNEDNQERKTPISADRVLEIFRNISDEDCVLLGFDT
KFARPEWMVITVLPVPPLQVRPSVVMMGSARSQDDLTYKLAEIVKTNNQLKRNEASGAAA
HVIAEDTKMLQYHVSTLVDNDIPGLPKAMQKSGRPLKSVKARLKGKEGRLRGNLMGKRVD
FSARTVITPDPNLRIDQVGVPKTIAQNLTFPEIVTPFNIEKLYALVYRGHNQHPGAKYII
RDNGDRIDLRFHPKASDLHLECGYKVERHINDDDVIIFNRQPTLHKMSMMGHRVKILPWS
TFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEIMLVPRQIITPQANRPVMGIVQD
TLTAVRKMTKRDVFVDKEQMMQILMWLPSWDGKIPMPAILKPKPLWTGKQIFSLVIPGPV
NVIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGQLLSGIICKKSLGTSAGSLIHIVFLEL
GQEICGRFLSHIQTVVNNWLLLEGHSIGIGDTIADPQTYRDIQESIKKAKQEVEEVIAKA
HNDELEPTPGNTLRQTFENQVNRILNEAREKTGSSAQKSLSDYNNFKAMVVAGSKGSKIN
ISQVIACVGQQNVEGKRIPFGFRHRTLPHFITDDYGPESRGFVENSYLAGLTPSEFFFHS
MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVQYDGTVRNAHQAMIQLRYGEDGLDSCA
VEFQNLATMKPSNTAFEKRFKMQTSNERYLKKLYEPGVVSDILANPDVPNILEQEFQQMK
RDRETIRKIFPTGESRVVLPCNLSRMIWNAQKTFHINLRGTSDLHPVRVVEGVSELLKKL
VIVKGEDRLSREAQENATILINTMIRSTLCSRKMAEEHHLNTEAFEWLLGEIESKFAQSQ
AVPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPKTPSLT
VFLLGQAARDAEKAKEVLCRLEHTTLRKVAANTAIYYDPDPQQTVIQEDQEFVNVYYEMP
DFDTSRVSPWLLRIVMDRKRMTDKKLTMESIAEKIQQGFGDDLLVIFNDDNAENLVMRIR
IMNNPTDDKMDDETRDQVDKMEDDMFLRCIETNLLSDLTLQGIEAISKVYMHLPLVENNK
KRVVITDEGEFKAISEWILETDGTSLMRVLADRDVDPVRTVSNDICEVFAVLGIEAVRKS
LEKEINHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGPLMKCSFEETVD
VLMEAAAHAECDYLKGVSENIMLGQLARLGTGAFDLILDPDKCRHGMEVPMNIANLAHIE
DGAGALLDGRNAPLTPWLNAGTPSYNQAWSPLAAVTPGHSVFSPMPNMSPMMTPRGDGGA
SPWSPAAGLMSPGPSSPMFPMSPNPSYSPSSPLHVGPSSHYSPSSPVYSPTSPAGASPNY
SPTSPNYSPTSPSYSPVSPRHSYSPTSPSYNALSPSVGAGGLGGASPSYSPTSPRIGYSP
TSPSYSPTSPQMYSAGTGSPTYSPSSPAYYSPTSPQYSPASPSYSPTSPQYSSPASPAYS
PSSPAYISPASPVYSPSSPSYSPSQISPASPSYQYND
NT seq
5334 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgccgctctcactatggactcgtctgcgccgatccggacggtgaaacgggtg
cagtttggcatcctgagtccggacgaaattcgcgcgatgtcggcgtcggaaggtgggatc
aagtaccccgaaatctacgaacagggtcgacccaaactcaatggactgatggatccgcgt
ttgggaactgtggacaggatgatgcggtgtcagacgtgtgctggcaacatgacggagtgc
ccagggcatttcggtcatatcgacttggcaaaaccagtatttcatgtcgggtttctaaca
aaaacgatcaaagtgctccgctgtgtttgcttcacttgttcccgtttgttggtgaacccg
gaaacagatgcaatgaaacgagccatagcactctccaagggaaatcccaagaagcgcctc
caagtggtatacgatatttgtaagtccaagagtatttgtgagggtggggcggagttggac
gcgaaaaaaccagacgatggcgatggtgcaccggaagatgccaccaagaaaaaaactgga
ttctccggctgtggacgctaccaaccgcgaataaagcgcagcggtttggatctttttggt
gaatggaaaaatttgaatgaagacaaccaagagcggaaaactccaatctctgcagatcga
gtgttggaaatttttcggaacatttctgacgaagactgtgttctgctgggttttgacaca
aagttcgctcgaccggagtggatggttattactgtactgccggtgcccccgcttcaagtt
cgaccttcagttgtcatgatgggatctgctcgtagccaggacgatctcacatacaagctg
gcagagattgtgaaaaccaacaatcagcttaagcgaaatgaggcgagcggagctgcagcg
catgtgatcgctgaagatacgaaaatgttacagtaccacgtgtctactttggttgataat
gatattcctggtcttccaaaggccatgcaaaaatctgggcgcccgttgaagtctgtcaag
gcgcgtctcaaaggaaaggaaggtcgtctccgcggtaatttaatgggtaaacgggtcgac
ttttcggctcgtactgtaatcaccccagatcccaacctacgtatcgatcaagtcggagtt
ccgaaaaccatcgctcagaatcttacttttcctgaaattgtaacaccgttcaacatcgaa
aaactgtacgctttggtttaccgtggacacaatcaacatcccggcgcgaaatacatcatc
cgagataatggtgacagaattgacctccgatttcatccgaaagcaagtgacttgcacttg
gaatgtggttacaaggttgaacgtcatataaacgacgatgatgtcattattttcaaccgt
cagccaacgctgcacaaaatgtctatgatggggcacagagtaaaaattctaccttggtca
acgttccgtttgaatcttagtgttacgactccgtacaatgcggatttcgacggtgacgaa
atgaatttacatgttccacaatctatggaaaccagggccgaagtttcagaaatcatgctg
gtaccgcggcagattattacaccacaggcaaatagacccgtcatgggtatcgtgcaagat
actttgacagccgtgcggaagatgacaaagcgcgatgtatttgttgataaagaacaaatg
atgcagatactaatgtggctgcctagctgggatggcaaaatcccaatgccagccattctg
aagccgaaaccgttgtggaccggaaagcagattttcagcttagtaatccctggacccgta
aatgtcatccgtacccacagcactcatccggatgacgaggatgatggcccctataaatgg
atttcccctggtgatactaaggtgttgattgagcacggtcagttattgagcggcattatc
tgtaaaaaaagtctcgggacgtcagctggatcgttgattcatatcgtctttctggagttg
ggccaggaaatctgcgggagatttttgtcgcatattcaaactgttgtgaacaactggctg
ttgctggaaggccacagtatcggcattggagatacaatcgctgatccacagacataccgc
gacattcaggaatcaattaaaaaagccaaacaggaagtggaggaagtcattgcaaaagcg
cacaacgatgaactcgaaccaactccaggcaatacgttgcggcagaccttcgaaaaccaa
gtgaacaggattctgaatgaagctcgtgaaaaaactggttcaagcgctcagaagtcctta
tccgattataacaacttcaaggctatggtcgtcgccggatcgaaaggctccaagatcaac
atttcccaggtcattgcttgtgtcgggcagcagaacgtggaaggaaagcggatacctttc
ggcttccgacaccgtactctgccacattttatcacggatgattacgggccagaaagtcgt
ggttttgtggagaattcctacttagcaggattgacaccgtcagaatttttcttccactcc
atgggaggtcgggaaggtttaattgatacagccgtgaaaactgctgagacggggtacatt
cagcggcgtctgattaaagccatggagagcgtcatggtgcagtacgatggaacggttaga
aatgcccatcaagcgatgatccagttacggtacggcgaagacggtctggactcatgcgct
gtcgagttccaaaatctagccacaatgaaacccagcaatactgcttttgaaaagcgtttc
aaaatgcagaccagcaacgagagatatttgaagaaattgtatgagccgggtgtggtcagt
gatattttggctaatccggatgtacctaacattttggaacaagaattccagcagatgaag
cgtgatcgtgagactatccggaagatttttcccacaggtgaatcgcgtgttgtgttgccg
tgtaatctttcgcgtatgatatggaacgcacaaaagactttccacatcaacttgcgtgga
acaagtgatcttcatcctgttcgtgttgtggaaggtgtctcggagcttttgaagaaattg
gtgatcgtcaagggagaagatcgattgagcagggaagcacaggaaaatgctacaattttg
attaataccatgattcgttctactctttgctcgaggaagatggctgaggagcatcaccta
aatacggaagcattcgagtggttgttgggtgagatagaatccaagttcgcgcaatctcaa
gccgtgccgggagaaatggtgggtgcactggctgctcagagtctgggagaaccggctacg
cagatgactttgaacaccttccattatgccggagtctctgctaagaacgtaacccttggt
gtgccgcgattgaaagagttgattaacgtaagcaaaaagccgaaaacaccatcgctgacc
gtgtttttgcttggccaagcagcgagagatgcagaaaaagccaaggaagtgctgtgccgg
ctggaacatacgacccttcgtaaagtggctgccaataccgctatctattacgatcccgac
ccgcagcagacagtcatccaggaagatcaagagtttgtaaatgtgtattatgaaatgccc
gatttcgatacttcccgcgttagtccctggctactgcgcattgtaatggaccgtaaacgt
atgacggataagaaattaaccatggaaagtatagctgagaaaatccagcaaggatttggc
gacgatttgttggtcatcttcaacgatgacaatgcggagaacctggttatgcgcatccgt
atcatgaataatccaacggatgacaaaatggatgatgagacgagggatcaagttgataag
atggaggatgacatgtttttgcggtgtatcgaaacgaatttgttgtccgatctgacattg
cagggaatcgaagcgatcagcaaagtgtacatgcacttgccactagtggagaataacaag
aaacgcgttgttataacggacgaaggagaatttaaagccatttcagagtggattctggaa
acggatggtaccagtttgatgagggtgttggctgatcgagatgtggaccccgtcaggact
gttagtaatgatatatgcgaagtgtttgcggtcttgggtatcgaagcggttcgtaagtcg
ctggaaaaagaaataaatcacgtcatttctttcgatggctcttacgtgaattaccgccat
ttggcacttttgtgcgatgtgatgaccgctaaagggcatttgatggctataacccgccat
ggcataaatcggcaggaagtgggaccactaatgaagtgttctttcgaagagactgtggat
gtgttgatggaagccgcggctcatgcagaatgtgattaccttaaaggtgtgtcggagaat
atcatgcttggacagctggctcggctgggaacgggagctttcgacttaattctggacccc
gataagtgccgacatggtatggaggtacccatgaatatcgccaatttggctcacattgaa
gatggagcgggagctttgttggacggaagaaacgcgccactgacaccttggctcaatgct
ggcacgccgtcatacaatcaggcttggtcaccattggccgccgtcacgccaggccattct
gtattttcaccgatgcctaacatgagcccgatgatgacacctcggggagatggcggagca
tcgccttggtcccctgctgccggactcatgtcaccggggccttccagcccgatgtttcca
atgtcgccgaatccgagttattcgccttcatcgccattgcatgtcgggccaagcagccat
tactctcctagctcgcctgtgtattctccaacttctccagctggcgcatctccaaattat
tctccgacgagtcccaattacagtccaacgagtccatcctactcacctgtcagtccacgg
cattcgtattcgccaacctcgccgagctacaatgctttatctcctagtgttggagccggt
ggacttggaggagcttcgccaagctacagccctacgtctccgcgcattggatattctcca
acgtcgcctagctatagtccaacatcgccacagatgtacagcgctggcactggatccccg
acttacagcccttcaagtccggcgtattactcaccaacatctccacagtattctccggct
tctccatcgtacagccccacatcaccgcagtacagttctccagcaagtccggcgtattcg
ccaagttctccagcatatatttcaccagcttctccagtttattcaccttcttcaccctcc
tattcgccgtcgcagatttcaccggccagtccaagttaccagtacaacgactaa
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integrated database retrieval system
