Pseudomonas mendocina NK-01: MDS_2116
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Entry
MDS_2116 CDS
T01473
Name
(GenBank) short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
pmk
Pseudomonas mendocina NK-01
Pathway
pmk00071
Fatty acid degradation
pmk00280
Valine, leucine and isoleucine degradation
pmk00310
Lysine degradation
pmk00362
Benzoate degradation
pmk00380
Tryptophan metabolism
pmk00410
beta-Alanine metabolism
pmk00640
Propanoate metabolism
pmk00650
Butanoate metabolism
pmk00907
Pinene, camphor and geraniol degradation
pmk00930
Caprolactam degradation
pmk01100
Metabolic pathways
pmk01110
Biosynthesis of secondary metabolites
pmk01120
Microbial metabolism in diverse environments
pmk01200
Carbon metabolism
pmk01212
Fatty acid metabolism
Module
pmk_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
MDS_2116
00650 Butanoate metabolism
MDS_2116
09103 Lipid metabolism
00071 Fatty acid degradation
MDS_2116
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
MDS_2116
00310 Lysine degradation
MDS_2116
00380 Tryptophan metabolism
MDS_2116
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
MDS_2116
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
MDS_2116
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
MDS_2116
00930 Caprolactam degradation
MDS_2116
Enzymes [BR:
pmk01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
MDS_2116
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
MDS_2116
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
MDS_2116
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
2-Hacid_dh_C
AlaDh_PNT_C
DAO
UDPG_MGDP_dh_N
F420_oxidored
Motif
Other DBs
NCBI-ProteinID:
AEB58147
LinkDB
All DBs
Position
2326894..2329053
Genome browser
AA seq
719 aa
AA seq
DB search
MTDAIRYEKGQDNIVVLTMDMPGQSANTMNAVYREAMGQIVDRLEAEKDSIAGVIVTSAK
KTFFAGGDLNELIKVTKAEAQGFYEMILKIKGQLRRLETLGKPVVAAINGAALGGGWEIA
LACHHRIALNESHVQLGLPEVTLGLLPGGGGVVRMVRLLGLEKALPYLAEGKKVRPDAAL
KAGLIHELASDRDEMLAKARAWIAANPAAKQPWDVQGYKIPGGTPSSPNVAQMLAIAPSV
LRDKTKGCFPAPEKIMCAAVEGAQVDFDTAQIIEARYFTELTCGQVAKNMIGTFWFQLNE
INAGGSRPQVYPKTQTKKVGVLGAGMMGAGIAYVSAAAGIEVVLKDVSVEAAEKGKSYSA
KLLDKKVSKGHMTAEQREAFLALITATDSEADFSGCDLIIEAVFEDRALKGKVTAAAEAA
ALSDAVIASNTSTLPITGLATAVAKPEKFIGLHFFSPVDKMPLVEIIRGEKTSDETLARG
FDYVMQIKKTPIVVNDSRGFFTSRVFGTFTNEGLAMLGEGVSAAMIENEARKAGMPVGPL
AISDEVSMSLMNHIRQQTIKDLAAEGKSIPEHPAFAVIDLMLGEYKRPGKAAGMGFYDYP
AAGAPASGKKYLWPELKARFEKADAQIAQEDVRDRILFIQAIETVRCVEEGVLKSVADAN
IGSIFGIGFAAWTGGALQFINQYGVKDFVARAQYLAEQYGERFLPPALLLEKAARGDRF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgccatccgttacgaaaaaggccaggacaatatcgtcgtcctgaccatggac
atgcctggccagagcgccaacaccatgaacgcggtatatcgcgaggccatgggccagata
gtcgatcgtctggaagcggaaaaggattcgattgcgggggttatcgtcacctcggcaaag
aagaccttcttcgctggcggcgacctcaacgagctgatcaaggtcaccaaggccgaggct
caaggcttctacgagatgatcctgaagatcaagggtcagctacgccgcctggaaaccctc
ggtaagccggtggttgctgccatcaacggtgcggcgctgggcggcggctgggaaatcgcc
ctggcctgtcaccaccgcatcgcccttaatgagagccacgtgcaactcggtctgccggaa
gtcaccctgggtctgctgccaggcggtggcggggtggtgcgtatggtgcgtctgctcggc
ctggagaaagccctgccgtacctggccgaaggcaagaaggtgcgcccggatgcggcgctc
aaggcaggcctgatccacgagctggccagcgaccgcgatgagatgctggccaaggcccgc
gcctggatcgccgccaacccagccgccaaacagccctgggacgtgcagggttacaagatc
ccgggcggcacgcccagctcgccgaacgtggcgcagatgctggccattgctccgagcgtg
ctgcgtgacaagaccaagggctgcttcccggcgccggagaagatcatgtgcgcggcggtt
gagggggcgcaggtcgacttcgataccgcgcagatcatcgaggcgcgctacttcaccgag
ctgacctgcggccaggtggcgaagaacatgatcggcaccttctggttccagctcaatgaa
atcaatgccggcggctcacgcccacaggtctatccgaaaacccagacgaagaaggttggc
gtgctcggcgctggcatgatgggcgctggtatcgcctatgtgtcggcggcggccggtatc
gaggtggtgctcaaggacgtgtccgtcgaagcggcggagaagggtaagagctattcggcc
aagctgctcgacaagaaagtcagcaagggccacatgacggctgagcagcgcgaggctttc
ctggccttgatcactgccaccgacagtgaggctgatttttccggctgtgacctgatcatc
gaagccgtgttcgaggatcgtgcgctcaagggcaaggtcacagccgctgccgaagccgcc
gcgctgagtgacgcagtgattgcctccaacacctcgacgctgccgatcaccggcctggcc
actgccgtggctaaaccggagaaattcatcggcctgcacttcttcagtccggtcgacaag
atgccgctggtggagatcattcgtggcgagaagacctcggatgaaacgctggcgcgcggc
ttcgactacgtcatgcagatcaagaagacgccgatcgtggtcaacgacagccgtggcttc
ttcacctcgcgggtgttcggcaccttcaccaatgaaggcctggccatgctcggtgaaggc
gtcagcgcggccatgatcgagaacgaggcgcgtaaggccggcatgccggtcgggccgctg
gcgatcagtgacgaagtgtcgatgagcctgatgaaccatatccgccagcagaccatcaag
gatctggcggccgagggcaaatccattccagaacacccggcctttgccgtgatcgacctg
atgctgggtgaatacaaacgcccgggcaaagcggcgggcatgggcttctacgactaccct
gcggccggcgctccagccagtggcaagaagtacctgtggcctgagctcaaggcgcgtttc
gagaaggctgatgcgcaaatcgcgcaggaagacgtgcgcgaccgcatcctgttcatccag
gccatcgagacggttcgctgcgtggaagagggcgtcttgaagtcagtggccgatgccaat
atcggctcgatcttcggcatcggcttcgcagcctggaccggcggtgcgctgcagttcatc
aaccagtacggggtgaaggacttcgtcgcgcgtgctcagtacctggccgagcagtacggc
gagcgtttcctgccgccggcactgttgctggagaaggccgcaaggggtgacaggttctaa
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