Pseudomonas mendocina NK-01: MDS_4176
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Entry
MDS_4176 CDS
T01473
Name
(GenBank) protocatechuate 3,4-dioxygenase
KO
K00449
protocatechuate 3,4-dioxygenase, beta subunit [EC:
1.13.11.3
]
Organism
pmk
Pseudomonas mendocina NK-01
Pathway
pmk00362
Benzoate degradation
pmk01100
Metabolic pathways
pmk01120
Microbial metabolism in diverse environments
pmk01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
MDS_4176
00624 Polycyclic aromatic hydrocarbon degradation
MDS_4176
Enzymes [BR:
pmk01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.3 protocatechuate 3,4-dioxygenase
MDS_4176
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Motif
Pfam:
Dioxygenase_C
PCDO_beta_N
CarboxypepD_reg
Motif
Other DBs
NCBI-ProteinID:
AEB60207
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Position
complement(4585462..4586181)
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AA seq
239 aa
AA seq
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MPAEDNCRFVIRDRNWHPKAFTPDYKTSITRSPRQALVSIPQSISETTGPDFSHLKFAEH
DNDLLLNFNNGGLPIGERIIVSGRVMDQYGKPIPHTLVEMWQANAGGRYRHKNDRYLAPL
DPNFGGVGRALTDSEGRYIFRTIKPGPYPWRNNPNDWRPAHIHFSLNGPSISTRLITQLY
FEGDPLIPLCPIVKAIANPDAVQTLIAKLDMSTANPMDCLAYRFDIVLRGQRKTHFENK
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgaggacaattgccgtttcgtcattcgtgaccgtaattggcacccgaaagcc
ttcacccccgactacaagacctccatcacccgctcaccgcgtcaggcgctggtgagcatc
ccgcaatcgatttccgaaaccaccggtccggacttctcgcacctgaagttcgccgagcac
gacaacgacctgctgctcaacttcaataacggtgggctgcccatcggtgagcgcatcatc
gtctccggccgggtgatggatcagtacggcaagccgatcccgcataccctggtggagatg
tggcaggccaacgccggtggccgctaccgccacaagaacgaccgctatctggcgccgctc
gatcccaacttcggtggtgtcggccgcgcgctgaccgacagcgaaggccgctacatcttc
cgcaccatcaagcccggcccctatccgtggcgcaacaatcccaacgactggcgtccggcg
catatccacttttcgctcaacggcccgtcgatctccacgcgcctgatcacccagctgtat
ttcgagggtgacccgttgattccgctgtgcccgatcgtcaaggcgatcgccaacccggac
gcagtgcagacgctgatcgccaagctggatatgagcacggccaatccgatggattgcctg
gcctaccgcttcgacatcgtgctgcgtggccagcgcaaaacccatttcgagaataagtaa
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