Penaeus monodon (black tiger shrimp): 119583786
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Entry
119583786 CDS
T08784
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmoo
Penaeus monodon (black tiger shrimp)
Pathway
pmoo03020
RNA polymerase
pmoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119583786
09124 Replication and repair
03420 Nucleotide excision repair
119583786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoo03021
]
119583786
03400 DNA repair and recombination proteins [BR:
pmoo03400
]
119583786
Enzymes [BR:
pmoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119583786
Transcription machinery [BR:
pmoo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119583786
DNA repair and recombination proteins [BR:
pmoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119583786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
119583786
NCBI-ProteinID:
XP_037788401
EnsemblRapid:
LOC119583786
LinkDB
All DBs
Position
17:43680858..43704122
Genome browser
AA seq
1850 aa
AA seq
DB search
MAGLESKAPLRPVRRVQFGILSPDEIRRMSVTEGGIMFSEVYENGRPKLGGLMDPRQGCL
DRNTRCTTCAGNMADCPGHFGHMDLAKPVYHVGFLTKTMKILRCVCFYCSKLLYNTQHPK
VREIVTKSKGQPRKRLLHVYNLCKGKMICEGGDEVDIVKEPEDVGQHPHHPHHPHHTAQL
RKATTGGHGGCGRYQPNVKRVGLDLIAEWKHVNEDTQEKKQTLSAERVYEIFKHISDEDC
YLLGMDPRYARPDWMILTVLPVPPLPVRPAVVMYGSARNQDDLTHKLSDIIKANNELLRN
EQSGAAAHVIVENIKMLQFHVATMTDNDMPGMPRALQKSGRPLKALKSRLKGKEGRIRGN
LMGKRVDFSARTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNMTKMMELVKRGNNQY
PGAKYIVRDNGARIDLRYHPKPSDLHLQCGYRVERHITDGDLIIFNRQPTLHKMSMMGHR
VKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENLHLTPRMVVTPQSNRP
VMGIVQDTLTAVRKMTKRDVFLEKSEMMDLLMFLPIWDGRMPHPAILKPKPLWTGKQLFS
LIIPGNINVVKTHATHPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGASSGSMM
HLAWMELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRVIQNTIKKAKEDV
IEVIHKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG
SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
SEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGE
DGLAGEFVEFQNLPTIKLSTRRFEDRYRFDISNERYLRKLFTEEVVRDVLGSPDAITSLE
TEWQRLQEDRQILRQVFTKGDSKVVLPCNLDRMIWNVQKIFHINKRTQTDLSPVRVVDGV
KRMLDRCIVVSGNDRISRQANENATLLFQCLVRSTLCTKKVAEEYRLTVEAFNWLVGEIE
TRFNQALASPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK
PKAPSLTVFLLGAAARDAEKAKNVLCRMEHTTLKKVTSNTAIYYDPDPQNTVIVEDQEFV
NVYYEMPDFDVSRISPWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAE
KLVLRIRIIVGDDKLSDDAEEQVDKMEDDTFLRCIEANMLNDLTLQGIESISKVYMHLPQ
TDEKKRIVINEQGEFKAIAEWLLETDGTALMKVLSERDVDPIRTSSNDILEVFEVLGIEA
VRKCIEKEMNAVLMFYGLYVNYRHLALLCDVMTSKGHLMAITRHGINRQDTGALMKCSFE
ESVDVLMEAASHAEVDPIRGVSENIMLGQLPRLGTGSFDLVLDDDKCKLGMEIPMPGTGM
VMAGSLFGAASPSSALTPAQTPWATASTPSMSPYGGWTPGVGSGMTPGGPAFSPTVTDAG
LSPGYSPAWSPQPGSPGSPAAAMSPYFPSPASALSPSYSPSSPAYQPASPSLTPASPGYS
PTSPTYSPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYAPNYSPSSPGYSPTSPSYSPTSPSYSPTSPQYSPASPSYSPSSPKYSPTSPTYSPTSP
SYSPSSPKYSPTSPHYSPTSPSYSPTSPTYSPSSPQYSPSSPKYSPTSPTYSPSSPKYSP
TSPTYSPTTPGYSPTSPIYSPSFEKEEEEEEEEEAEEEEQSKKQKKKGKR
NT seq
5553 nt
NT seq
+upstream
nt +downstream
nt
atggccggcttggagagcaaggcgccgctgcggccggtcaggagggtccagttcggtatt
ctcagtccggacgaaatccgccgcatgtccgtgaccgagggcgggatcatgttttccgaa
gtctacgagaatgggcggccgaagttgggcggcctcatggaccctcgtcaaggctgtttg
gacaggaacacccgttgtaccacatgcgcgggcaacatggccgattgtccgggtcatttc
ggccacatggaccttgccaaaccggtctaccacgttgggtttctcaccaagaccatgaag
attctccgatgcgtgtgcttctattgcagcaagttgctttataacacgcaacacccaaaa
gttcgcgagatcgtcaccaagtcgaagggtcagcctcggaagcgcctcctgcacgtctac
aacctgtgcaagggcaagatgatctgcgaaggaggcgacgaagtggacatcgtgaaggag
cccgaggacgtcggccagcaccctcaccaccctcaccaccctcaccacaccgcccagctc
cggaaggcaaccacgggcggccacgggggttgtgggcggtaccagccgaacgtgaagagg
gtgggactcgacctgattgccgagtggaagcacgtcaacgaagacactcaggagaagaag
cagaccctctcagcagagagggtctacgagatcttcaagcatatttcagacgaggactgc
tacctgctgggcatggacccccgctacgcgcgccccgattggatgatcctgacggtgctg
cccgtgccgccgctgcccgtgcgccccgccgtcgtgatgtacggctcggcgcgcaaccag
gacgacctcacgcacaagctctccgacatcatcaaggccaacaacgagctcctgcgcaac
gagcagagcggggcggccgcgcacgtcatcgtcgagaacatcaagatgctgcagttccac
gtggccaccatgacggacaacgacatgcccggcatgcccagggcgctgcagaagtccggg
cggccgctcaaggccctcaagtcgcgcctcaagggcaaggagggcaggatccgcggcaac
ctaatgggcaagagggtcgacttctccgccaggaccgtcatcaccgccgaccccaacctc
aggatcgaccaggtgggcgtcccgaggtccatcgcgcagaacctcacctacccagagatc
gtcacgcccttcaacatgaccaagatgatggaactagtgaaacgcggcaataaccagtac
ccgggcgccaagtacatcgtgcgggacaacggggcccggatcgacctgcgttaccacccg
aagccctccgacctccatttacagtgcgggtatcgggtcgaacgtcacatcacggacggc
gacctcatcattttcaatcggcaacccacacttcataagatgtctatgatggggcatagg
gtgaaggtcctcccttggtccacgtttcgcatgaacctctctgtgacgtcaccttacaac
gcggacttcgacggtgatgagatgaatctgcacgtcccccagagcatggagacgcgagcc
gagattgagaacttgcatttgacgcccaggatggttgttacgccacagtccaacaggcct
gtcatgggtattgtgcaagataccctcacggccgttcggaagatgacgaaaagggacgtg
tttttggagaagtcggagatgatggacttgcttatgttccttccaatctgggacggaagg
atgccccatccggccatcctcaaacccaagcccctgtggaccgggaaacaactcttctct
ctcattattcccggtaatattaatgtagtgaagacccacgcgacacaccctgacgacgag
gatgacggcccgtataagtggatctcgccgggagacactaaggtcctggtggagcacggc
gagctgatcatgggcatcctgtgcaagaagacgctgggcgcgtcgtcgggctccatgatg
cacttggcgtggatggagctcggccacgagatcgccggccgcttctacggcaacatccag
acggtggtgaacaactggctgctgctggagggccacagcatcggcatcggcgacaccatc
tcggacccgaacacgtaccgcgtgatccagaacaccatcaagaaggccaaggaggacgtg
atcgaggtgatccacaaggcgcacaacgacgagctcgagcccacgccgggcaacacgctc
cgccagacgttcgagaaccaggtgaaccgcatcctcaacgacgcccgtgacaagacgggc
ggctcggccaagaagtccctcacggagtacaacaacctgaaggccatggtggtggcgggc
tccaagggctccaacatcaacatctcgcaggtgatcgcgtgcgtgggccagcagaacgtc
gagggcaagcgcatccccttcggcttccgcaagcggacgctgccgcacttcatcaaggac
gactacgggcccgagtcgaggggcttcgtcgagaactcgtacctggccggcctcacgccc
tccgagttctacttccacgccatgggcggccgcgagggcctcatcgacacggccgtcaag
accgccgagacaggctacatccagcggcgtctgatcaaggccatggagagcgtgatggta
aactacgacggcaccgtcaggaacagcgtgagccaggtcatccagctccggtacggcgag
gacggcctcgccggagagttcgtcgagttccagaacctgcccaccatcaagctgtcgacg
cgccgcttcgaggaccgctaccgcttcgacatctccaacgagaggtacctccggaagctg
ttcacggaggaggtggtcagggacgtcctcggctcgcccgacgccatcaccagcctcgag
accgagtggcagaggctgcaggaggaccggcagatccttcggcaggtgttcacgaagggc
gactccaaggtggtcctcccgtgcaacctggaccgcatgatctggaacgtgcagaagatc
ttccacatcaacaagcgcacccagacggacctctcgccggtgcgggtcgtcgacggcgtc
aagaggatgctcgacaggtgcatcgtcgtcagcgggaacgaccggatcagtcgtcaggcg
aacgaaaacgccacgctgctgttccagtgtctcgtgaggtcgaccttatgcacgaagaag
gtggcggaggaatacaggttgacggtcgaggctttcaactggctggtcggcgagatcgag
acgcggttcaaccaggcgcttgcctcccccggcgagatggtgggcgcccttgccgcgcag
tcactgggcgaacccgcaactcagatgaccctcaacactttccatttcgccggcgtctcc
tccaagaacgtcaccctgggcgtgccgcgtctcaaggagatcatcaacatcagcaagaag
ccgaaggcgccgtcgctcaccgtgttcctcttgggcgccgctgccagggacgctgagaag
gcgaagaacgtgctgtgccggatggagcataccacgctgaagaaggtaacctcgaacact
gccatttactacgacccggacccccaaaacacagtcatcgttgaggaccaagaattcgtt
aacgtttactacgaaatgcccgatttcgacgtctcacgaatctccccttggcttctgcgc
atcgaactcgataggaaaaagatgacagacaagaagctgacgatggagcagatttcgcag
aagatcaactccggctttggcgacgacctcaactgcatcttcaacgacgacaacgctgag
aaactcgtgctccgaatccggatcatcgtgggggatgacaagctttcggacgacgcggaa
gagcaggtggacaagatggaagacgacacgttcctgcggtgcatcgaggccaacatgctg
aacgacctgacgctgcagggcatcgagtccatctcgaaggtgtacatgcacctgccgcag
acggacgagaagaagcgcatcgtgatcaacgaacagggcgagttcaaggccatcgccgag
tggctgctggagacggacggcacggcgctcatgaaggtgctgtcggagcgcgacgtggac
cccatccgcacgtcctccaacgacatcctcgaggtgttcgaggtgctgggcatcgaggcc
gtgcgcaagtgcatcgagaaggagatgaacgccgtgctcatgttctacggcctgtacgtc
aactaccgccacctggccctgctgtgcgacgtcatgacgagcaagggccatctcatggcc
atcacgcgccacggcatcaaccgccaggacacgggcgccctcatgaagtgctcgttcgag
gagtcggtggacgtgctgatggaggcggcgtcgcacgccgaggtggaccccatccgcggc
gtgtccgagaacatcatgctgggccagctgccgcgcctgggcaccggctccttcgacctg
gtgctcgacgacgacaagtgcaagctgggcatggagatccccatgccgggcacgggcatg
gtcatggccggcagcctgttcggcgccgcgtcgccgtcgtccgccctcacgccggcgcag
acgccctgggccacggcctccacgccctccatgtcgccctacggcggctggacccccggc
gtgggcagcggcatgaccccgggcggccccgccttctcgccgaccgtcaccgacgcgggc
ctgtcgccgggctactcccccgcgtggtcgccgcagcccggcagccccgggtcgccggcc
gccgccatgagcccctacttccccagccccgccagcgcgctctcgccctcctactcgccc
tcctcccccgcctaccagcccgcctcgcccagcctcacccccgcctcgcccggctactcc
ccgacctccccgacctacagccccaccagcccccagtactcgcccacctcgccctcctac
tcgcccacctcgccctcctactcgcccacctcgccctcctactccccgacctccccttcg
tactccccgacctccccctcgtattccccgacctccccctcgtactccccgacttccccg
agctacgccccgaattactccccttcctcgccgggctactccccgacaagcccttcctac
tccccgacctcgccgtcttactccccgacttcgccccagtactcccccgcctccccttcc
tactcgccctcctcgcccaaatactccccgaccagcccgacctactcgccgacctcgccc
tcctactcgccctcctcgcccaaatactccccgacctctccccactactccccgacctcg
ccttcctactccccgacctccccgacgtactctccctctagcccccagtacagcccgagc
agcccgaaatacagcccgaccagcccgacttatagcccgagcagcccgaaatatagcccg
accagcccgacttacagcccgaccacgccaggctatagcccgacatcgccgatttattcg
ccgagtttcgaaaaagaggaagaggaagaggaagaggaagaggcggaggaagaggaacag
agcaagaaacagaagaagaaaggaaagcgttag
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integrated database retrieval system
