Petromyzon marinus (sea lamprey): 116939683
Help
Entry
116939683 CDS
T09614
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
pmrn
Petromyzon marinus (sea lamprey)
Brite
KEGG Orthology (KO) [BR:
pmrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmrn03016
]
116939683 (TARBP1)
03036 Chromosome and associated proteins [BR:
pmrn03036
]
116939683 (TARBP1)
Enzymes [BR:
pmrn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
116939683 (TARBP1)
Transfer RNA biogenesis [BR:
pmrn03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
116939683 (TARBP1)
Chromosome and associated proteins [BR:
pmrn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116939683 (TARBP1)
BRITE hierarchy
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
116939683
NCBI-ProteinID:
XP_032804293
EnsemblRapid:
ENSPMAG00000005848
LinkDB
All DBs
Position
6:complement(17005044..17075418)
Genome browser
AA seq
1738 aa
AA seq
DB search
MSTVLASCLLRCLGSLPPARVLEELTWGAEELPQTEQVEALLHVVRALAPEREKEPPGPH
GQTTESEGLDGGRGSQGHVGNPRGDVNATCPIAVDPDLASAVDKLVLSSCLPALCRIQTE
HTWSWTEPLPQGDCEVVARRQTQKRLLHLLCRLLARCLRLCGDASGELVVARCVSDIHAH
NDEKASGWAPRGDAGVPLGGSGGTAADGGGVETLDVHVAVELLCYVVRSLGPRAVSGATV
RVVSQALAVSEEALATRALSRLVPALLAAQRDREAAAALLRTLWGDLAEKRLDDTARSPS
SVSRALLFLCTMSDCVLPTSDPQGERSPKAAQGGGEDQATAPDARPQGLVDLRTSAAFWR
TLQDGLRHAVPLSRKRAVFLLKRAVDVSESLSRDVTCSDDDDRDGVPVFWWSVEAAPALL
PVWESYILVLETLEENQLHVVKPVLPRLRALVEATVAPGAGPPRAALASSWLCVVLGRVF
DSENKMVLREGVKLCLSLDVTRRPSLGQPFLEFICGPLMDALLDINLYQRCAGQPIGSCP
AIGCLLETFLPCCAAALPVQRRGAFLLQALSGIVHRHWSTVPLLFLSQALAAVPACPAWG
PEGLLVLREVVRCVLTTQQVLLRGAAQCFLLQAAVRLTDSSRVSLGDVLALLACVREDEA
LGRGTSLWAQVCEWLRVNDSEFAPCDVGAAPPTASATALNRFTLHSIRTFLKVPADEAGG
AGALLPDPQESHRVALTILLAADADAGAPPRSDCSRPGEAEPLAEFLAPLTDTLRRLGSY
AYLPRAKADRSLLLLLALLQKTEPRGGAEHAGSGADTVRSVLRDAAQACAEGLLQYLLRQ
LTYEMEQERDLERADLHLDVLTALVRVLGEGPPGVAPFLVDFISRLVRASLETLQGRPEE
AQTAPQLLQRAVAAASLAWTCGVVAVTPDLRRGCRVALEAAARHATSTPLNQTLARPTGT
LAARPEDGGAGGRGWGRVAARFIGDQWRCQYHMLSGREDPARTTLMPLLRGCLEALALLP
ADSALAVLRCLQPLLPQMCDDGEGGDVAEGATEEWASEARLGLCEHALQLAWKTVRDLGN
DPQAFWPALGAFVRAAFAPRLLALRVDDPVAGRLAGALAQLSGDLVRMAETKLGVFNVLV
THCCQTWLPPYGGPPEGGEEASVKDACSSALNHVALLAEAVLFGPVFRKEQRVLNDANSF
VEKLGEGCAANAVVACSESKDDYMVRVTALGFLHSLNPANPTQAKLSRAVLLTLLEKDRA
MAAGKARCFANSDQHRARNRLWQAVLLLLPSQSPDEVERVFARACAATADDNQPSVAYLL
EWALVLTLNRRPHLLGDLVAALAYDPEKNKSCVCSLLSVLAHFPTVAASNSDKQDAGLRC
LRAVLPWCMSHSFLVRLYALLTLGRVWGAACAPGAAERPAGPAEGELRALAPLVEVCLRG
AACMPAAGNIGRNWQKLQQHFFFNTFEPLLDYSVETIFWTFPRLSELSDDEWLWVGRFEA
LPWRRHAWPGAPPLANPRRELEAVHDTAWVLRERGSVTQDTDGVGDGDVQKKFVSWRGGL
ADPDLRGASLQEQRSARLGPPGGGLLVVASLVDKSTNLGGLCRTCEILGASALVLGGRHH
VSDRQFQALSVTAEQWLPILEVKPHALAAFLQEKKEDGYSIVGAEQTANSHDLTAFRFPA
RTLLLLGNEREGVPAGLLQQLDACVQIPQLGVVRSLNVHVSGALLVWEYARQHLLCPR
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtcctggcctcgtgcctgctgcgctgcctgggttccctgccgcctgcgcgg
gttttggaggagctgacgtggggcgcggaggagctgccccaaaccgagcaggtggaggcg
ctcctccacgtggttcgagctctcgctcccgagcgagagaaggagccgccaggaccccac
ggacagacgacggagtctgagggactcgatggaggtcggggcagccaggggcacgtcggg
aacccgcggggtgatgtgaacgcgacctgccccatcgcggtcgatcctgatctggcctca
gcggtggacaaactggtcctgtccagctgcctcccggccttgtgcaggattcagacggaa
cacacgtggtcctggacggagccgctccctcagggcgactgcgaggtggtggcacgccgg
caaactcagaagcgcctcctgcacctgctgtgccgcctgctcgcccgctgcctacggctt
tgtggcgacgcctccggggagctggtcgtcgctcgctgcgtctcggacatccacgcgcac
aacgatgaaaaggccagcgggtgggcccctcggggggatgcaggcgtcccgctaggtggc
tcggggggaacggcagcggacggcggcggagtcgaaaccctggacgtgcacgtcgctgtg
gagttgctgtgctacgtcgtccgctcgctcgggccccgagctgtctccggcgcgacagtt
cgtgtcgtctcgcaggctctggcggtgtcagaagaagctttggccaccagggccctcagt
cgtttggttccagcgctgcttgccgcacagagagaccgcgaggctgcagccgccttgctg
aggacgctgtggggcgacctcgcggaaaagcgcctggacgacaccgcccgcagcccctcc
tctgtgtctcgggcgctgctcttcctgtgcacgatgtccgactgcgtgctgcccacgagc
gatccccaaggcgagcggtcgccgaaggcggcgcagggcggcggcgaggatcaggcgacg
gctcctgacgccaggcctcagggcctcgtggatttgcgaacgtcggccgccttctggcgc
acgctgcaggacgggttgaggcacgcggtgccgctgagtcgcaagcgagcggtgttcctg
ctgaagcgcgctgtggacgtgagcgagagcctctcgagagacgtgacgtgctccgatgac
gacgatcgtgacggtgttcccgtgttctggtggtcggtggaggccgcgccggccctgctt
cccgtgtgggagagctacattctcgtcttggagacgctggaagagaaccagctacacgtg
gtgaagccggtgctgccacggctgcgcgcgctggtggaggcgacggtggcacctggagca
gggccaccgcgagcggcgctcgcctcgtcgtggctgtgcgtggtgctgggccgcgtgttc
gacagcgagaacaagatggtgctacgtgagggcgtcaagctgtgtctctcgctggacgtg
acacgacgaccctccctggggcagccgtttctagagtttatttgtggcccactcatggac
gctctcttggacatcaacctgtaccagaggtgtgcggggcagcccatcggatcgtgtccg
gccatcggctgtctcctggagacgtttctcccttgctgtgctgctgctttgcctgtccag
aggagaggcgcgttcctgctgcaggcgctgagcgggatcgtgcaccgccactggagcacc
gtgcccctcctcttcctgtcacaggccctggccgccgtcccagcgtgccccgcatggggg
cccgagggccttctcgtgctcagggaggtggtgcgctgcgttctgacgacgcagcaggtg
ctcctgcggggcgccgctcagtgcttcctgctgcaggcggccgtgcgcctcaccgactcg
agtcgcgtgagcctgggcgatgtcctggcgctgctggcttgcgttcgtgaggacgaggcc
ctgggccggggcaccagcctctgggctcaggtgtgcgagtggctgcgtgtgaacgactcg
gagttcgcgccctgtgacgtgggtgccgcccctcccacagcctcagcaaccgctttgaac
cggttcacgcttcactccatcagaaccttcctcaaagtgccggcagatgaagcagggggc
gcgggggcgctgctgcccgacccgcaggaatcgcaccgcgtggcgctgacgatcctgctc
gctgctgacgcggatgccggcgctccgcctcgcagcgattgctctcggcccggcgaggct
gagccgctggctgagttcctggcgcccctcacggacacgctgcgacggctgggctcgtac
gcctacctgccccgggccaaggccgaccgctctctgctgctgctgttggcgctgctgcag
aagactgaacccaggggcggagcagagcatgctgggagcggagcagacacggtgcgctcc
gtgctgcgtgatgcggcgcaggcctgcgccgagggcttgttgcagtacctgctgcgacag
ctcacctacgagatggagcaggagcgtgacctcgagcgcgctgacctccacctggacgtg
ctcacggcgctcgtgcgggtgctcggcgagggccctccgggggtggcgccgttcctcgtc
gacttcatctctcgcctcgtccgcgcctcgctcgaaaccttgcagggacgccctgaggag
gcgcagaccgccccccaacttctacagcgagcggtggccgcggcatccttggcgtggacg
tgcggtgtagtcgccgtgacccctgacctccggcggggctgccgtgtcgccctggaggcc
gcggcgcgccacgcgacctccacgcccctcaaccaaacgttggcgcggcccacgggcacg
ctcgccgcacggcctgaagacggcggcgccggcgggcgtggctggggccgcgtggccgcc
cgtttcatcggcgatcaatggcggtgccagtaccacatgctgagtggccgagaggacccg
gcgaggaccacgctgatgccgctgctgcgcggctgcttggaggcgctggcgctgctgccc
gcggacagcgcgctcgccgtgctgcgctgcctgcagccgttgctgccccagatgtgcgac
gacggggagggcggcgacgtcgccgagggggcgacggaggagtgggcgagcgaggcccgg
ttgggcctgtgcgagcacgccctgcagctcgcctggaagacggtgcgcgacctcggcaac
gacccgcaggcgttctggccggcgctcggcgcctttgtgcgggcggcgttcgctccgcgg
ctgttggccctccgcgttgacgaccccgtcgcagggcggctcgccggcgccctggcccag
ctgtcgggcgacctcgtgaggatggccgagaccaagctgggcgtcttcaacgtcctcgtc
acgcactgctgccaaacatggctgccgccctacggaggaccccccgagggaggcgaggag
gcatccgtgaaggatgcctgctccagcgccctcaaccacgtggccttactggcagaggcc
gttctttttgggcctgtcttcaggaaagagcagcgggtgttgaacgacgcaaactccttc
gtggagaaactgggcgagggctgcgccgccaacgccgtcgtggcgtgcagcgagagcaaa
gacgattacatggttcgagtgacggccctgggtttcctgcacagcctgaacccagccaac
ccaacacaggcaaagctcagccgcgccgtgctgctcacactgctggagaaggaccgggcg
atggcggcggggaaggcgcgctgcttcgccaactcggaccagcaccgcgcgcgcaaccgg
ctgtggcaggccgtgctgctgctgctgccctcgcagagcccggacgaggtggagcgcgtg
tttgcgagggcgtgcgcggcgacggcggacgacaaccagccgtccgtggcctacctgctt
gagtgggcgctcgtgctcacactcaaccgacggccgcacctcctgggcgacctcgtcgcc
gccctcgcctacgacccggagaaaaacaagagctgcgtctgcagcctgctctccgtgctc
gctcacttcccaacggtggccgccagcaactcggacaagcaggatgccggtctccgctgc
ctgcgcgccgtgctgccctggtgcatgagccacagcttcctggtgcgactctacgccctg
ctgacgctgggccgcgtctggggggcggcctgcgcgccgggagctgccgagaggccggcc
gggccggccgaaggggagctgcgggcgctggcgccgctggtggaggtgtgcctgcggggc
gccgcctgcatgccggccgccggaaacatcggcaggaactggcagaaactgcagcagcac
tttttcttcaacaccttcgagccgctactggactacagcgtggagaccatcttctggacc
ttcccacgcctctcggagctcagcgacgacgagtggctgtgggtgggccgcttcgaggcg
ttgccgtggcgacggcacgcctggcccggcgctccgccactcgccaaccctcgccgggag
ctggaggccgtgcacgacacagcctgggtgctacgggagagaggttcggtgacgcaggac
acggacggtgtcggtgacggtgacgtgcagaagaagttcgtgtcgtggcgcggtggcctc
gccgacccggacctgcggggtgcctccctgcaggagcagcgctcggcgcgacttggcccg
cctggcggcggcctcctcgtcgtggcgtcgctcgtcgacaagtccaccaacctgggcggc
ctgtgtcggacttgtgaaatcctgggcgcgtcggcgctggtgctgggagggcgtcaccac
gtgtcggaccgccagttccaggccctgagcgtcacggctgagcagtggctgcccatcctc
gaggtgaagccgcacgctctggccgcgttcctgcaggagaagaaggaggacggctacagc
atcgtgggcgcagagcagacggcgaacagccacgacctcacggccttccgcttccccgca
cgcacgctgctgctgctcggtaacgagcgcgagggggtgcccgcagggctgctgcagcag
ctggacgcgtgcgtccagatccctcagctcggggtcgtgcgctcgctcaacgtgcacgtc
agcggagccctgctcgtgtgggagtacgcgcgccagcacctgctgtgcccgcgctga
DBGET
integrated database retrieval system
