Pseudomonas mucidolens: NCTC8068_04173
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Entry
NCTC8068_04173 CDS
T08935
Symbol
rimO
Name
(GenBank) tRNA modifying protein
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pmud
Pseudomonas mucidolens
Brite
KEGG Orthology (KO) [BR:
pmud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmud03009
]
NCTC8068_04173 (rimO)
Enzymes [BR:
pmud01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NCTC8068_04173 (rimO)
Ribosome biogenesis [BR:
pmud03009
]
Prokaryotic type
ribosomal protein modification factors
NCTC8068_04173 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
CLP1_P
TRAM
Motif
Other DBs
NCBI-ProteinID:
SQH35523
LinkDB
All DBs
Position
1:4565736..4567076
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AA seq
446 aa
AA seq
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MSTTIAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVLAVTGPQQYEQVVNAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDASAYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWRQICPE
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAVVPDDVK
QERWERFMAHQQAISSARLQLRIGKEIEVLIDEIDEQGAVGRCFFDAPEIDGNVFIDDAS
GLKPGDKVWCTVTDADEYDLWAQKRD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaccatcgcaaaagccaaccccaaggttggctttgtatccctgggttgcccg
aaggctctggtcgactccgaacgcatcctgacgcaactgcgcatggaagggtatgacgtc
gtgtccacctaccaggacgccgatgtggtggtggtcaacacctgcggtttcatcgattcg
gccaaggcggagtcgctggaagtgatcggcgaagccatcaaggaaaacggcaaggtcatc
gtgaccggctgcatgggcgtggaggaaggcaatatccgcaacgtacaccccagcgtgctg
gccgtcaccggcccgcagcagtacgagcaagtggtcaatgccgtgcacgaagtggtgcca
ccacgccaggatcacaacccgttgatcgatctggtgccgccacaaggcatcaagctgacg
ccgcgccattatgcgtacctgaagatttccgaaggctgcaaccacagctgcagcttctgc
atcattccgtcgatgcgcggcaagctggtcagccgcccggtgggcgacgtgctggacgag
gcccagcgcctggtcaagtccggcgtcaaagagctgttggtgatttcccaggacgccagc
gcctatggcgtcgacgtcaaataccgcaccggcttctggaacggcgcgccggtgaaaacc
cgtatgaccgaactctgcgaagccctgagcagcctcggtgtgtgggtacgtctgcactac
gtttacccgtacccgcacgtcgacgaactgatcccgttgatggccgctggcaagatcctg
ccgtacctggacattccgttccagcatgccagcccgaaagtgctcaaggcgatgaaacgc
ccggccttcgaagacaaaaccctggcgcggatcaagaactggcgccagatctgcccggag
ctgatcatccgttcgaccttcatcgtcggcttccccggcgaaaccgaagaagacttccag
tacctgctggactggctgaccgaagcccagttggaccgtgttggctgcttccagtactcg
ccggtggaaggcgccccggccaacctgctggacgccgcggtggtcccggatgacgtcaag
caagagcgttgggagcgtttcatggcccatcaacaagccatcagctcggcacgcctgcaa
ctgcgcatcggcaaggaaatcgaagtgctgatcgatgaaatcgatgagcaaggcgcggtg
ggccgttgcttctttgatgccccggagattgacggtaacgtgtttatcgacgacgccagc
ggtctcaagcccggcgacaaggtctggtgtacggtgactgacgccgatgaatacgacctc
tgggcgcaaaaacgcgattaa
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