Prunus mume (Japanese apricot): 103319265
Help
Entry
103319265 CDS
T03196
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmum03016
]
103319265
Enzymes [BR:
pmum01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
103319265
Transfer RNA biogenesis [BR:
pmum03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
103319265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
103319265
NCBI-ProteinID:
XP_008218998
LinkDB
All DBs
Position
LG2:2988907..2997343
Genome browser
AA seq
631 aa
AA seq
DB search
MEDIEDLLVGSGGGAPPGFRLPITAVGLNPKKNKNQNKPNPNGNSNKLSQIQDPLAPLSP
KIPGTETIYIKTFGCSHNQSDSEYMAGQLSAFGYPLSDNPEEADLWLINTCTVKSPSQSA
MDTLIAKGKGAKKPLVVAGCVPQGSRDIKELEGVSIVGVQQIDRVVEIVEETLKGHEVRL
LSRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDGLVERVKSV
IADGVKEIWLSSEDTGAYGRDIGANLPILLNAIVAELPSDASTMLRIGMTNPPFILEHLK
EIAEVLRHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFKTVVDILTELVPGMQIATDII
CGFPGETDEDFTQTLSLIKLYKFPQVHISQFYPRPGTPAARMKKVPSTVVKRRSRDLTSV
FEAFTPYVGMEGRVERIWITEVATDGIHLVGHTRGYVQVLVAAPESMLGTSAIVKITSVG
RWSVFGEVIETIPHINDTVSGNERPKQEKSFSGLNHYETSACSTKSENCCCGPESCGGQA
EKCAVTKNDVQLEDRNSRNLIGWLLRKRKNHVAKPVENEIGLGSQKKQEQTQGSLGEWGV
VDRALLGGMLVSFLTIVTLLLHLGFRILSSN
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatagaggatttgctagttgggagcggaggtggagctcctccgggttttcgt
ttgcccataacagccgtcggattgaacccaaagaagaacaagaaccagaacaaacccaat
cccaatggcaatagcaataagctatctcaaatccaagacccccttgctcctctctctccc
aaaatccctggaactgagactatatatatcaagacatttgggtgctcacacaaccagagt
gacagtgaatatatggctggccaactttcagctttcggttatccattaagtgacaatcct
gaggaggcagacctgtggctcataaatacatgcacagtcaaatctccaagtcaatctgcc
atggatactctgatagcaaaaggtaaaggtgcaaaaaaaccactggtggtggctgggtgt
gtgccgcaaggaagtcgagatataaaggagctagaaggtgtcagcattgttggagtccag
caaattgaccgtgtggttgaaattgttgaagagactttgaaaggtcatgaggtgcgcctt
ttgagccgtaagacattgccagcgcttgaccttcctaaggtgaggaaaaacaagttcgtt
gagattctccctattaacgttggttgtttaggtgcttgcacttactgcaagactaagcat
gctcgtggtcatttagggagttataccgttgatggccttgtggaacgtgtaaaatctgtg
atagctgacggagtcaaagaaatatggttgagcagtgaagatactggagcttatggtcgt
gacattggtgccaatctaccaattttattgaatgcaattgttgcagaactcccttcggat
gcaagcacaatgcttcgaattgggatgacaaatcctcctttcattctggagcacttgaaa
gaaatagcagaagttttgcgacatccatgtgtatactcatttctacatgtaccagtccaa
tctggaagtgatgctgtattaactgcaatgaatcgggaatatactgtaagcgagttcaag
actgtggtagatatcctaactgagcttgtgccagggatgcagattgcaactgatataatc
tgtggatttcctggtgaaacggatgaagattttactcaaactcttagccttattaagctg
tacaagttccctcaagttcatatttcgcagttctatcctcgaccaggaacacctgctgca
aggatgaaaaaggtccccagtactgtagtgaagaggaggagtcgtgacttgacttctgtt
tttgaagctttcacaccatatgttgggatggagggcagggtggaaagaatatggataact
gaagttgccactgatggaattcacttggttggccataccaggggatatgtgcaggtgctt
gtagctgctccagaaagtatgttggggacttcagctattgtgaagatcacatctgttgga
aggtggtcagttttcggagaagtgattgagactattcctcatataaatgatacagtttcg
ggaaatgaaaggcctaagcaggaaaaaagtttctctggtttgaaccattatgagactagt
gcatgttcaacaaagtcggaaaattgttgttgtggaccagaaagctgtggaggacaagcg
gaaaagtgtgctgtaacaaagaatgacgttcagctggaagacaggaacagcagaaatctg
attggatggctactgaggaagcgaaaaaaccatgttgcgaaacctgtggagaatgaaata
ggcttgggatcccagaaaaagcaagagcagacccaaggaagcttgggtgaatggggtgtc
gttgatagggctcttctaggcgggatgcttgtgagcttcctgacaattgtaactctacta
ttacatcttggatttaggattctgtcatctaattag
DBGET
integrated database retrieval system
