Prunus mume (Japanese apricot): 103322422
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Entry
103322422 CDS
T03196
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103322422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103322422
Enzymes [BR:
pmum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103322422
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
103322422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CxC7
Motif
Other DBs
NCBI-GeneID:
103322422
NCBI-ProteinID:
XP_008222562
LinkDB
All DBs
Position
LG1:complement(4514791..4535390)
Genome browser
AA seq
1425 aa
AA seq
DB search
MRTMNRGQAKTLIFTKQPFIEDEGHRKIEKWQFSTMSDTEIVNMAETQIYKCNYYDPNQK
PIEGGLLDPRLGPANKSSGECATCGAVMKDCPGHFGFLVLALPVLNVGYLSTIVDILKCI
CKLCSGILLEEGMRNDFLKKMRSPKMEPLRKTELMKKIVKKCNNLTTNYRPVKCSKCGFI
NGSVKKAVGVLGIIHDRSKLNGVMDDFRTTLSHTKESKASFNVATHMLNPARIYSLFKRM
VDEDCELLNLSNRPENLIMKNIAVPPIAIRPSVIVDRSLSNENDITERLKRIIQSNAILR
RDLLEAKSAPKCLASWDILQVEVAQYINSDIRGVPFSMQTAKPLSGFVQRLKGKGGRFRG
NLSGKRVEYTGRTVISPDPNLKITEVGIPIKMAQILTYPERVSHHNIEKLRQCVSNGPDK
YPGARMLRNPDGTEWSLKVNRKNAADGLKYGDIVERHLEDGDIVLFNRQPSLHRMSIMCH
RAKVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVLLMGVQNNLCTPKNGE
VLVASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTDPVDLPTPAVIKPIELWTGKQ
LFSVLVRPNSNVRVYLNFTVNEKSYSKTEDGGPEAMCPNDGFVYFRNSELIAGQLGKGTL
GNGNKDGLYSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPSDNLYNEKEK
IIKEGYNKCAGKIKLYNEGQLPLEPGCDAAQSLESGITKILNNIRDQTGKLCMQTLHWRN
SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPAAKGFVA
SSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKILEDLSVQYDNTVRNASG
CIVQFCYGDDGMDPAMMEGEGGAPLDFRRLFLKAKATCPAGENESLSLEEVSEIVKDRLS
KQDMTPDRGCSAGFKSSLEEFLDKYAKELRKTHDTFVLDQSPAWKEKSASLEKIVQNISG
VTCKQLEVFLNTCISRYHSKKVEAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTL
GVPRIKEIINGAKKISTPIVTAILEHNNNAKFARVVAGRIEKTMLGQVSKSIKIVMTSRS
ASIVITLDMVMIQDAHLSIDANVVKESILRTPRIKLKQEHVKVLDIRKLEILPQEADRSR
LHFNLYYLKSVLPKVIVRGISTVQRVVIDAKEVKKNKKDLEVTCADGDKREEKEYKLFAE
GTGLLSVMGTEGVDGCKTTSNDVMEVQRTLGIEAARVCIIEEIKHTMKSHGMNIDDRHMI
FLADVMTYRGEVLGITRFGVQKMDKSVLMMASFERTDDILFNACVNGRVDKVEGVSESII
MGIPMQIGTGIFKVRQRVSSDLRQPTYLGPNSDVELHYGPHPSLT
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgatgaatagaggccaagccaagaccctaatcttcaccaaacagcccttcatc
gaagacgaagggcatcgtaaaatagaaaaatggcaattcagcaccatgtccgacacggag
attgtcaatatggctgaaactcaaatttataaatgcaattattatgatcccaatcaaaag
cctattgaaggcggcttattggacccccgcttgggcccagcaaataagagtagtggtgag
tgtgcgacatgtggtgcggtaatgaaggactgtccagggcactttggattcttggtgctt
gccctccctgttttgaatgttggatatttaagtactatcgtggacattttgaagtgcatt
tgcaagttatgttctggcatacttttggaggagggaatgcgcaacgactttttgaagaag
atgagaagtcccaagatggagcctttgaggaaaaccgagttgatgaaaaagatagtgaag
aagtgtaataacttgacaaccaattatagaccagtgaagtgctccaaatgtggatttata
aatggttcagtgaagaaggccgtgggtgtgctgggcattattcatgatcgttcaaaactt
aatggtgttatggatgactttcgaacaacgctttctcacacgaaagagtccaaggcatcc
tttaatgtggcaactcatatgctaaaccctgctagaatttattctctgtttaaaaggatg
gttgatgaggactgcgagttgcttaatctttcgaatagaccagagaacctcatcatgaaa
aacattgctgtgccacctatagctattcggccttctgttattgtggatagatcactgagc
aatgaaaatgacattacagagaggttaaagagaattattcaatccaatgctattcttaga
cgggatttattagaagcaaaatctgcacccaaatgtttggctagttgggatatacttcaa
gttgaggttgcacagtatataaatagtgacattcgtggtgttcccttttccatgcaaact
gccaagccattgagtggttttgtacagcgcctcaaagggaaggggggccgttttcgtggg
aatttatcagggaagcgtgttgaatatactggcagaactgttatatcacccgaccctaat
ttgaaaatcactgaggttggaatccctatcaaaatggctcaaatcttaacttatccagaa
cgtgtttcccatcataatattgagaagttgaggcagtgcgtcagtaacggacctgataag
taccctggtgccagaatgctcagaaatcctgatggcactgaatggtccttaaaggttaac
agaaagaatgctgctgacggactcaaatatggtgacatagttgaacgtcatctagaagat
ggggacattgttcttttcaacagacaaccaagcttgcatcggatgtctatcatgtgccat
agggctaaggttatgccttggagaacattgaggtttaatgaatctgtttgcaacccttac
aatgctgattttgatggtgatgaaatgaatatgcatgtcccacaaacagaggaggctcgg
acagaggctgttttgttgatgggggtgcaaaacaatctatgcactcccaaaaatggagag
gttttggttgcttccactcaagattttctaacatcctctttccttataacaaggaaggac
acattttatgaccgtgcatccttttcactcatgtgttcatatatgggggatggaacggat
cctgttgacttgccaacacctgctgtaattaagccaatagagctatggacggggaaacaa
ttatttagcgttctagtacgcccaaattcaaatgtgagagtctatctaaattttactgtt
aatgagaaatcatacagcaagactgaagatggaggacctgaagcaatgtgcccaaatgat
gggtttgtttattttcgtaacagtgagctcatagctggccaacttgggaagggtacctta
ggaaatggcaataaggatggactttactctgtacttctcagagactacaaagctcatgcg
gctgcttcttgcatgaatcgcctagctaagttaagtgctcggtggattggaaatcacgga
ttctcaattgggattagcgatgtacaaccaagtgacaatttgtacaatgaaaaggaaaag
ataattaaggagggttataacaaatgtgctggtaagataaagttgtataatgaaggacag
ctaccacttgaacctggttgtgatgcggcacaatcacttgagtctgggataactaaaata
ttaaacaatattagagatcaaactggaaagttgtgcatgcaaacgctgcattggagaaac
agtcccttgatcatgtcccagtgtggttctaaaggatctcctatcaatattagccagatg
attgcctgtgttggtcaacaatcggttggtggtcgtcgtgcacctaatggattcatagat
cgaagccttcctcacttccctagaaaagcaaaaacccctgcagctaaaggctttgttgct
agttccttttacagtggcttgacagctacagagttctttttccatactatgggtgggcga
gaggggcttgtcgatacagctgtgaaaacagctgatactgggtacatgtctcgtagattg
tcgaaaattttagaggacctatctgtccagtacgataacacagtacggaatgcaagtgga
tgcatagttcaattttgttatggggatgacggtatggatcctgcaatgatggaaggagaa
gggggagctcctttagattttcgtcgattgtttttgaaagctaaggccacgtgtcctgct
ggagaaaatgaaagcttgtcccttgaagaagtgtctgagatcgtgaaagaccggctttca
aaacaagatatgactcctgatcgtggttgctctgcaggtttcaaaagttctttagaggaa
ttcctggataaatatgcaaaagaattaagaaaaacacatgatacttttgtgttggatcaa
agtccagcttggaaggaaaagtctgctagtctggagaagattgtccaaaatatttctgga
gttacttgtaaacagctcgaggtttttctcaatacttgcatttctcgttatcattcaaaa
aaagtcgaagctggaacagcaattggagtaattggagctcaaagtattggcgaacctggg
acacagatgacactgaaaacttttcactttgctggggttgcaagcatgaacgttacactt
ggagtccctcgtatcaaggaaataataaacggagcaaaaaagatcagtacacccattgtt
actgcaatacttgagcataataataatgcgaaatttgcacgggtggtggcaggtcggatt
gagaaaacaatgcttgggcaggtctctaagagtataaaaattgtaatgacttcaagatcg
gcatccatagtcatcactcttgatatggtcatgattcaagatgcacacttgtctatagat
gctaatgtcgtaaaagaatcaattttacgaactccgagaatcaaactgaagcaagagcat
gttaaggttttggatatcagaaaattggaaattcttcctcaggaggctgatagaagtaga
ctccattttaacctctactatttaaaaagtgtgctcccaaaagttatagtaaggggtata
agcactgttcaacgtgttgtcattgatgcaaaagaagttaaaaagaataaaaaggatctt
gaagttacatgtgctgatggtgataaaagagaagaaaaggagtacaagttgtttgcagaa
ggcacgggtcttctgtcggtaatgggcactgaaggagttgatggttgtaaaaccacaagt
aatgatgttatggaagtgcagcggacacttggaattgaagctgcgagagtttgtatcatt
gaggagataaagcatactatgaaatcgcatggaatgaacatagatgatcgccatatgatt
tttttagcggatgtgatgacgtatcggggtgaagttcttggaatcacaagattcggtgtt
cagaagatggacaaaagtgttttgatgatggcttcatttgaacggacagatgatattcta
tttaatgcatgcgtaaatgggagagttgacaaggttgaaggagtaagtgaaagcataatc
atgggtataccaatgcagataggcactggaatatttaaagttagacaaagagtttcttct
gatttgaggcagcccacatatttgggaccaaattcagacgtggaactgcattatgggcca
cacccaagtctaacttga
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integrated database retrieval system
