Prunus mume (Japanese apricot): 103339460
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Entry
103339460 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103339460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103339460
Enzymes [BR:
pmum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103339460
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
103339460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
103339460
NCBI-ProteinID:
XP_016651983
LinkDB
All DBs
Position
LG8:complement(5787442..5807530)
Genome browser
AA seq
1677 aa
AA seq
DB search
MAASEVPTTSVDAIRFGFFTDEEVRKHSFVKVTSPILFDDSTHTPVNGGLYDKAMGPLGD
ERGQLCQTCGQTAYTCSGHCGHIDLVLPAYNPLLFNILHKLLQRTCFFCYHFRTSRQHVE
KHVSQLKLIMKGDVLGAKRLESDSPSEYSDCNGSGNHIDNDSKQQGWTSLQFTEIMSVLD
KALPTHGXNCKAKNPKISKPTFGWFQMSGKDHARENVLRGCNLEGPLTGQDEEASMLEDE
NFNSVATRMQKGQGSKVLSEFFKQKNSLSGDLFPTEVKEIIRLLWENESQLCSFISDIQC
QETGTNGGHSMFFLETVLVPPIKFRPPSKGGDSVMEHPQTVLLSKVLEANVSLSQTLTNL
EHSRTIRRWRDLQESINVMFNSKTAAGQGQRDAAPGICQLLEKKEGLFRQKMMGKRVNFA
CRSVISPDPYLAVNEIGIPPYFATRLTYPERVTPWNVDKLRNAIVNGSEIHPGATQYVDK
SGPKILRQNRRERISISRKLPSSKGAVMQHGKGSDNDIESKIVHRHLRDGDIVLVNRQPT
LHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRSEAYNIVNAN
NQYVKPTSGDPIRALIQDHVISAVLLTKKDTFLRWDQFNQLLYSSCVSARVSDAFSGKPD
KKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHITRGSPPVTVERDAKIPRGFFN
CKNVEGEDKSGKDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLVRGVIDKAQF
GDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGFTCGIDDLLLLESKDAKMKDQLE
SCEDVGENVYRDFIEVKDVKRKDPVELQLNIENFIRSNGESALASLDRRMISQLNNKTSN
SDVFKQLLLRGLSKPSVKNCIYLMTTSGAKGSVANLQQITSYLGQQELEGKRVPQMISGK
TLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCII
KNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVHMTSFIQKFESLIANKEMFHKKGRRQM
DKLNPYIKDLPLALKEKAEKFVHNLALKEKDHNFQEDFLKLMEHKYLCSLAQPGEPVGVL
AGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAANDIKTPVMTCPLQKGRSK
EEAQELADKLKKITVADIIESMKVTFVPFFIQDGQTCRIYKLEMTLHIPEHLRTIIEYSS
EDWEEILEIVFVRELEDAIQNHILLLSKISGIKNFTPDSQPKASNETDENLSEKRSQREE
EDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDYEDGCDDEVREADLSDGDESEIDE
EENEVEIGKDGEIGVIDASDEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMV
KKETDRAIFVSAKGFHFEVHFRFTDNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCD
ENQVLCFGKDPENKQSFSSKEKKEMPALQTTGIDFGTFWQLQDILDVRYIYSNNIHAMLN
TYGVEAARETIIREINNVFKSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESISPF
NKMTFETASKFIVEAAYHGQVDRLETPSARICLGLPVNVGTGCFDLMHKMEVECTQR
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcagaggttccgacgacgtccgtggatgcgattaggtttggcttcttcacc
gacgaagaggttcggaagcacagctttgtgaaggttaccagcccaattttgttcgatgac
tcaacacacacgcccgtgaatggtgggctttacgacaaggcgatgggcccactcggggat
gaacgcggccaactttgccaaacatgtggtcagacagcatatacgtgctcaggtcattgt
ggtcatattgaccttgttttgccagcttataatcccttgctgttcaacattctccacaaa
cttctacaaagaacctgtttcttctgctaccatttccggacaagccgacaacatgttgag
aaacatgtttcccaattgaaactcataatgaaaggtgatgttcttggggctaaaaggtta
gagtctgactcacctagtgaatactcagactgcaatgggagtggtaatcacatagacaat
gattcgaagcagcaaggatggacttctcttcagtttacagagataatgtctgttttggat
aaggctttgccaacacatgganngaattgcaaggctaaaaatcccaaaatcagtaaacct
acttttggatggttccaaatgagtggcaaggaccatgcgagagaaaatgtcctcagaggg
tgcaacctggagggacccttgactggtcaagatgaagaggcatctatgcttgaggatgag
aattttaacagtgttgctacaagaatgcaaaaaggacaagggagcaaagtgctcagtgag
ttctttaagcagaaaaattccttgtcgggagatctatttccaacagaggttaaagaaatt
attaggcttctgtgggaaaatgaatctcaactctgctcttttattagtgatatccagtgc
caagaaactggaacaaatggaggtcactctatgtttttcttggagactgttcttgtacca
ccaatcaaattccgtcctccatccaagggtggtgattctgtgatggagcatcctcaaacc
gtcttattaagtaaggtgctggaggcaaatgtctctttgagccaaactcttaccaactta
gagcactcaaggacaattcgacggtggagggatcttcaagagagtataaatgtgatgttc
aatagcaaaactgctgctggtcaaggtcaaagagatgcggctcccggaatatgtcagttg
cttgagaagaaggaaggcctgttccggcagaaaatgatgggcaaaagggtaaattttgcg
tgccggtctgtcatatctccggatccctacttagctgttaatgagattgggattcctcca
tactttgcaacgagattaacatatcctgagagagttactccgtggaatgttgacaagctg
aggaatgctattgtcaacggttctgaaatccatcctggagctacacaatatgttgataaa
tctggtcccaagattttgaggcaaaacaggagagaacgcatttcaatatcaagaaaatta
ccttcttcaaaaggggctgtcatgcaacatgggaagggctctgataatgacattgaaagt
aaaatagtgcatcgtcacttgcgagatggggacattgtgcttgtcaatcgacagcctaca
cttcacaaacccagtataatggcgcatgtagttcgtgtattgaagggggagaaaacaatt
cgcatgcactatgctaattgcagtacttacaatgctgattttgatggtgatgagatgaat
gttcattttccgcaagatgaaatttcccgttcggaagcttacaatatcgtaaatgcaaat
aatcagtacgtaaagccgaccagtggagatcccattagagccttgattcaggatcatgtt
ataagtgctgtcctccttacaaagaaggatacatttttacgttgggatcaatttaatcag
cttctttacagttcttgtgtttcagcccgtgtgtcagatgctttctctggcaaaccagat
aaaaaagttttcatgtttaactctgaaggcacaatgcagccccttcttcctgcaatttgg
aaaccagagccgctttggacaggaaagcaggtcatcactgccttgctaaatcatattact
agaggttctccgccagttactgttgaaagagatgcaaaaatcccacgtggtttttttaat
tgtaaaaatgttgaaggagaagataaatctggtaaagatggacagcaaaaaaagaggaaa
ccaagcaaagaacaagcaactgataaagatagctcaaaggaaaaagaggagcctgatgag
aaccatttattaatatatagaaacaacttagtgcgcggcgtgattgacaaggctcagttt
ggtgattatggtttggtccatacagttcaggagttctatggctcagatactgcaggaaaa
ttgctttctgtattgagtcatttatttaccgtgtatttgcagatgcatgggttcacgtgt
gggattgatgatcttttgctattggaaagcaaagacgcaaaaatgaaggatcaactagaa
agttgtgaagatgtgggtgaaaatgtttaccgtgattttatcgaggtcaaagatgttaag
agaaaagatccagtggaactgcaattaaacatcgaaaattttattcggagtaatggagaa
tctgccttggcatccttggataggagaatgattagtcagcttaataacaagacctccaac
tctgatgtgttcaaacaattattgttgagggggttatcaaaaccatcagttaaaaattgt
atctatcttatgacaacatctggggctaaaggtagtgtggctaatctccaacaaataact
tcatatttgggtcagcaagagctagaaggcaaacgggtccctcaaatgatttctggaaag
accttaccgtgctttcccccatgggattggtcatctcgagcaggaggctttatcattgat
cgttttcttactggtcttcatcctcaggagtactatttccattgcatggctggccgtgaa
gggttggttgatacagctgtcaaaacatctcgtagtggatacttgcaaagatgcataata
aaaaatcttgagtgcctaaaagtttcttatgacaataccgtccgtgatgctgatggttcc
attattcaatttcgttatggagaagatggcattgatgtccatatgacgagctttattcaa
aagtttgaatcccttatagctaataaagaaatgtttcacaagaaaggtcgtcgtcaaatg
gataaattaaatccttatattaaagacttgcctttggctctcaaagaaaaagcagagaag
tttgtgcataatttggccttgaaagagaaagatcataacttccaagaggatttcttgaag
ttaatggagcacaaatacctctgtagtcttgctcaacctggagaaccagttggtgttctt
gccggtcagtctgtaggagaaccgtcaacacagatgacactgaatactttccatcttgcg
ggacgaggtgaaatgaatgtgacccttggaatcccacgcctccaagagatcttgatgact
gctgcaaatgatattaagacgccggttatgacatgcccattgcaaaaggggagatcgaag
gaggaagctcaggagctagctgataagttgaagaagatcactgtggcagacataatcgag
agtatgaaagtaacctttgtgccatttttcattcaggatggtcaaacttgccgtatttat
aagcttgagatgacactccacataccagaacatcttcgaaccatcattgaatattcatca
gaagattgggaggaaatcctagagattgtgtttgttagggagttggaagacgccatacaa
aatcatattcttttgctttctaaaattagtggtattaaaaatttcacgcctgattcacaa
ccaaaggcatcaaatgagacagatgaaaatctttctgaaaaaagatctcaacgtgaggaa
gaagatgatgacaatggtggtgcagatgatggtgaacatggtgaaggggtcgaggatttt
ggtctggatgcccataagcgaaagctacaagctacagatgagatggattatgaagatggc
tgtgatgatgaagtgagagaagcagacttgtcagatggagatgaaagtgaaattgatgag
gaggaaaatgaagttgaaattggtaaggatggtgaaattggggttatcgatgctagtgat
gaaatgcctggaagtcctttagaagaagctggggacctagctaagcccaagtcgaaggag
aaaaagaccaaatcaggatcccaaattagaaagaaaaggaaggtccgagcagagatggta
aaaaaggagactgacagggcaatttttgtgtcagcaaaggggttccacttcgaggtccat
tttagatttaccgacaatgaacctcatattttgctgtctcagattgctcagaagacagcc
cagaaggtttatattcagagatctggaaaggttgctgactgtaaacaaattacttgcgat
gaaaatcaagtcctctgctttgggaaggatcctgaaaataaacaaagtttttcatccaag
gaaaaaaaggagatgccagctctgcaaactactggaattgatttcggtacattttggcaa
ctgcaagatattcttgatgtcaggtatatttattccaataacatacatgctatgctgaac
acttacggagtagaagccgccagggaaactatcatccgagaaataaataatgttttcaag
tcttacggaatatccgtcaacattaggcatcttacactaatagctgactttatgactcat
gctggtggttatcgtccattgaatcgattcggaggcattgtagagtcgatatctccgttt
aataaaatgacttttgagacagcttccaagttcattgttgaagcagcatatcatgggcag
gtggatcgcttggaaaccccatccgctaggatctgtcttggattgccagtaaatgtgggt
actggatgttttgatttgatgcacaagatggaggttgaatgcacacagagatag
DBGET
integrated database retrieval system
