Pseudomonas otitidis: PtoMrB4_43100
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Entry
PtoMrB4_43100 CDS
T06890
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
poj
Pseudomonas otitidis
Brite
KEGG Orthology (KO) [BR:
poj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
poj03009
]
PtoMrB4_43100 (rimO)
Enzymes [BR:
poj01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PtoMrB4_43100 (rimO)
Ribosome biogenesis [BR:
poj03009
]
Prokaryotic type
ribosomal protein modification factors
PtoMrB4_43100 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
RNase_II_C_S1
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BCA30333
UniProt:
A0A679GI48
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All DBs
Position
4678756..4680078
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AA seq
440 aa
AA seq
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MSTATPKVGFISLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAE
SLDAIGEALSENGKVIVTGCMGVAEDSIRDVHPSVLAVTGPQQYEQVVNAVHEVVPPKTE
HNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERL
VKAGVKELLVISQDTSAYGVDLKYKLDFWNGQPVKTRMLELCEALSAMGVWVRLHYVYPY
PNVDDVIPLMAAGKLLPYLDIPFQHASPNVLKAMKRPAFEDKTLARIKKWREICPELTIR
STFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVDGAPANDLGLEPVPDDIKQDRW
DRFMAHQQAISAARLQRKIGQEMDVLVDEVDHEGAVARSWADAPEIDGSVFIDNPNLKPG
EKVRVRVVDADEYDLWAECI
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcaacacccaaagtcggattcatctccctcggctgccccaaggcgaccgtc
gactccgagcgcatccttacccagctgcgcatggagggttacgagatcgttccgacctac
caggacgccgacgtcgtggtggtcaacacctgcgggttcatcgacagcgccaaggccgaa
tccctggacgccatcggtgaggcgctctcggagaacggcaaggtgatcgtcaccggctgc
atgggcgtggccgaggacagcatccgtgacgtgcacccgagcgtgctggccgtgaccggc
ccgcagcagtacgagcaggtggtcaacgccgtgcacgaagtggtgccgccgaagaccgag
cacaacccgcttatcgacctggttccgccccagggcatcaagctgactccgcgccactac
gcctacctgaagatttccgagggctgcaaccacagctgcagcttctgcatcatcccctcc
atgcgcggcaagctggtcagccgcccggtgggcgacgtgctctccgaggctgagcgcctg
gtgaaggccggcgtgaaggaactgctggtgatctcccaggacaccagcgcctacggcgtg
gacctcaagtacaagctggacttctggaacggccagccggtgaagacccgcatgctggag
ctgtgcgaggcgctctcggccatgggcgtgtgggtgcgcctgcactacgtgtacccgtac
ccgaacgtggatgacgtgatcccgctgatggccgccggcaagctgctgccctacctggac
atccccttccagcacgccagcccgaacgtgctcaaggccatgaagcgcccggccttcgag
gacaagaccctggcccgcatcaagaagtggcgcgaaatctgccccgagctgaccatccgc
tccaccttcatcgtcggcttccccggcgagaccgaagaggacttccagtacctgctgaac
tggctgaccgaagcccagctggaccgcgtcggctgcttccagtactccccggtggacggc
gccccggccaacgacctgggcctggagccggtgccggacgacatcaagcaggaccgctgg
gaccgcttcatggcgcaccagcaggccatctctgctgcccgcctgcagcgcaagatcggc
caggagatggacgtgctggtggacgaggtggaccacgaaggcgccgtggcccgttcctgg
gccgatgccccggagatcgacggcagcgtgttcatcgacaaccccaacctgaagccgggc
gagaaggtccgcgtgcgggtggtggacgccgacgagtacgacctgtgggccgaatgcatc
tga
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