Pongo abelii (Sumatran orangutan): 100174438
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Entry
100174438 CDS
T01416
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100174438 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pon03021
]
100174438 (POLR1A)
Enzymes [BR:
pon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100174438 (POLR1A)
Transcription machinery [BR:
pon03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100174438 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100174438
NCBI-ProteinID:
NP_001127373
Ensembl:
ENSPPYG00000012217
UniProt:
Q5RAX8
LinkDB
All DBs
Position
2A:22145490..22231341
Genome browser
AA seq
1659 aa
AA seq
DB search
MLISKNMPWRRLQGISFGIYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQAVYELERILNRLLEENADPSASEIQEELEQYTAEIVQNNLLGSQGAH
VKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS
EPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLD
FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVAAPTT
DEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQI
LEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADLDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREQYMELVYRG
LTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKET
PRSIPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVRRQRIIEESTHCGPQAVRAALNLPEAASYD
EVRGKWQDAHLGRDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGRVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMKSQHLHEVLSRADPKKALCHFRAIKKWQSKHP
NTLLRRGAFLSYSQKIQEAVKALNLESENRNGRSPGTQEMLRMWYELDEESRRKYQKKAA
ICPDPSLSVWRPDIYFASVSETFETKVDDYSQEWAAQTEKSYEKSELSLDRLRTLLQLKW
QRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFRVYQLRFQ
FLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNVNTRRATQRDLDNA
GESGRSRGEQEGDEEEEGHIVDAEAEEGDFDASDAKRKEKQEEEVDYESEEEEEREGEEN
DDEDMQEERNPCREGARKTQEQDEEVTVKLPLMKINFDMSSLVVSLAHGAVIYATKGITR
CLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVI
EKEIKDVFAVYGIAVDPRHLSLVADYMCFGGVYKPLNRFGIRSNSSPLQQMTFETSFQFL
KQATMLGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgttgatctccaagaacatgccctggcggcggctgcagggcatttccttcgggatatac
tcggctgaagagctcaagaaattaagtgttaaatccattacgaaccctcggtacctggac
agcctggggaacccatcggcaaacggcctgtatgatttagctttgggccctgcagattcc
aaagaggtgtgctccacctgcgtgcaggacttcagcaactgttctgggcacctgggccac
attgagctcccactcacggtgtataaccctctcctcttcgataagctgtacctgctgctt
cggggctcttgtttaaactgccacatgctgacttgtccccgggccgtgattcacctctta
ctctgccagctgagggttctggaagtcggggccctacaagcagtatacgagcttgagaga
attctgaacaggcttctggaagaaaatgctgatccctctgcctctgaaattcaggaggaa
ttagaacaatacacagctgaaattgtgcagaacaacctcctggggtcccagggcgcacat
gtaaagaacgtgtgtgagagcaagagcaagctcattgctctcttctggaaggcgcatatg
aatgctaagcgctgtccccactgcaagaccgggcgatccgttgtccgaaaggaacacaac
agcaagttgactatcacgtttccagccatggtgcacaggacagctggccagaaggactcc
gagcccctgggaattgaggaagctcagataggaaaacgaggatacttaacacccaccagt
gcccgcgaacacctttctgccctgtggaagaatgaaggattctttctgaactaccttttt
tcgggaatggatgatgacggtatggagtccagattcaatcccagtgtgttctttctagat
ttcttggtggtgccaccctcaaggtatcgcccagtcagtcgcctaggagaccagatgttt
actaatggccagacggtgaacttgcaggctgtcatgaaggatgtagttctgattcgaaaa
cttctggcattgatggcccaagaacagaagctgccagaggaagtggccgcacccactaca
gatgaggaaaaagactctttgattgctattgaccgatcctttttgagtacacttccaggc
cagtccctcatagacaaactttacaacatttggattcgccttcagagccacgtcaatatt
gtgtttgatagcgagatggacaaactaatgatggacaagtacccaggcattaggcagatc
ctggagaagaaagaaggcctcttccgaaaacacatgatgggaaagcgggtggactacgct
gcgcgctcagtcatctgcccagacatgtacatcaacaccaacgaaattggaattcccatg
gtgtttgccacaaaactgacctacccacagccagttaccccgtggaatgttcaggaactt
aggcaagcggtcatcaacggccccaatgtgcacccaggagcctccatggtcatcaatgag
gacggcagccgcacagccctgagcgctgtggacatgacccagcgagaggccgtggccaag
cagctcctgaccccagccacgggggcacctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaatggggacattctgctactgaaccgacagcccaccctgcacagaccctcc
atccaggcccaccgtgcccgcgtcctgcctgaagagaaagtgctgcggctccactatgcc
aactgcaaggcctataatgccgaccttgatggagacgagatgaatgcccatttcccccag
agtgagctgggccgggccgaggcctacgtcctggcctgcaccgatcagcagtaccttgtt
cccaaggatggccagccattggcgggactgatccaggatcacatggtttcaggggcaagc
atgactactcggggttgctttttcacccgggagcagtatatggagctggtgtaccgagga
ctcacggacaaagtggggcgcgtgaagctcctttctccttccatcctgaagccctttccg
ctgtggacaggaaaacaggttgtgtcaacgctgctcataaatataatcccagaggaccac
atcccactgaacttatctggaaaggcgaaaatcactgggaaagcctgggtgaaggaaact
cctcggtccattcctggcttcaaccctgactcaatgtgcgagtcccaggtgatcatcagg
gaaggggagctgctctgcggagtgctggacaaggcgcactacgggagctccgcctacggc
ctggtccactgctgctatgagatctatggaggcgagaccagcggcaaggttctaacctgc
ctggcccgcctcttcactgcctacctgcagctctacagaggcttcaccttgggcgtggaa
gacattttggtgaagccaaaggcagatgtcaggaggcaacgtatcattgaagaatccacc
cactgcgggccccaggctgtcagggctgcattaaacctgccagaagccgcatcgtatgat
gaggtccgaggaaaatggcaggatgcccatctgggcagggaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggcatgc
atgccttttggcctacacagacagttcccagagaacagcctgcagatgatggtgcagtca
ggagccaaaggttcaactgtgaacacgatgcagatctcgtgcctgctgggccagattgaa
ttggaaggtcggagacccccgctgatggcgtctggcaagtcactgccctgctttgagcct
tatgagttcacccccagggctggtggctttgtcactggcagattcctcaccggcatcaaa
cctcctgagttcttcttccactgcatggcaggacgagagggcctggtcgacactgctgtg
aaaaccagccgctcaggctatctccaaaggtgcatcatcaagcacctggaggggctggtc
gtgcagtatgatctcacggtccgtgacagcgacggcagagtggtgcagttcctgtatggg
gaggatggcctggacatacccaagacacagttcctgcagcccaagcagttccccttcctg
gccagcaactacgaggtgataatgaaatcacagcatctccatgaagttttatccagagca
gatcccaaaaaagctctctgccacttcagagctatcaaaaaatggcaaagcaagcacccc
aacaccctgctgagaagaggcgccttcttgagttattcccagaaaattcaggaagctgtg
aaagccctgaaccttgagagtgaaaaccgcaatggccgcagtcccgggactcaggagatg
ctaaggatgtggtatgagttggatgaggaaagccgaaggaaataccagaagaaggcggcc
atttgtcctgaccccagtctgtctgtctggcgtcctgacatctactttgcatcagtgtcg
gaaacatttgaaacaaaggttgatgactacagtcaagagtgggcagctcaaacagagaag
agttatgagaaatcagagctttctctcgacaggttgaggaccttgctgcagctgaagtgg
cagcgctcactgtgtgagccgggtgaggccgtgggcctgctggctgcccagagcatcgga
gagccctccacccagatgaccctcaacaccttccactttgcaggcagaggcgagatgaac
gtcaccctgggcattccaaggttgcgggagattctcatggtggccagcgccaacatcaag
acgcccatgatgagcgtgccggtgctcaacaccaagaaagctctgaagagagtgaaaagc
ctgaagaagcaactcaccagggtgtgcttaggggaggtgttgcaaaaaattgacgtccag
gagtccttctgtatggaagaaaaacagaacaaattccgggtgtaccagctgcggtttcag
ttcctgccacatgcgtattaccagcaggagaagtgcctgagacccgaggacatcctgcgc
ttcatggaaacaagattctttaaacttctgatggaatccatcaaaaagaagaataataaa
gcatcagccttcaggaacgtaaatactcgaagagctacgcagcgggatctggacaatgct
ggggagtcagggaggagtcggggagagcaggaaggcgatgaagaagaggaggggcacatt
gtggatgctgaagctgaggagggggacttcgatgcctctgatgccaaacgcaaggagaag
caggaggaggaggttgattatgagagtgaggaagaggaggagagggagggcgaggagaac
gacgatgaagacatgcaggaggaacgaaatccctgcagggaaggtgctcgaaagacccaa
gagcaagacgaagaggtgacagtgaagctccctctgatgaagatcaactttgacatgagc
tccctggtagtatctttggcccatggcgccgtcatctatgcaaccaagggcatcactcgg
tgcctcctgaatgaaacaaccaacaagaagaacgagaaggagcttgtgctaaacacagaa
ggaatcaacctcccagagctgttcaagtatgcagaggtcctggatctgcgccgcctctac
tccaacgacatccacgccatggccaacacgtatggcatcgaggccgcgctgcgggtgatc
gagaaggagatcaaggatgtgtttgccgtgtatggcatcgcggtcgaccctcgccacctc
tccctggttgctgattatatgtgctttgggggtgtttacaagccactgaatcgctttggg
atccggtcaaactcttccccgctacagcagatgacgtttgaaaccagcttccagtttctg
aagcaagccaccatgctgggatcccacgatgagctcaggtctccttctgcctgtcttgtg
gtcgggaaggttgtcaagggcgggacaggcctgtttgagctcaagcagcccctgagatag
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integrated database retrieval system
