Populus trichocarpa (black cottonwood): 18099391
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Entry
18099391 CDS
T01077
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00900
Terpenoid backbone biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
18099391
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pop01006
]
18099391
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
18099391
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
18099391
2.5.1.29 geranylgeranyl diphosphate synthase
18099391
Prenyltransferases [BR:
pop01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
18099391
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
18099391
NCBI-ProteinID:
XP_006383335
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All DBs
Position
17:12888818..12890192
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AA seq
364 aa
AA seq
DB search
MAFFSVTISCYDNLLLKKSINGLYTQPRASLDHIKFFPMKTQATYAANPSFEQSFRAHEE
NNKPQKVPLPPFGFKEYMIRKGNQVNKALDEAVPLQHPRKIHEAMRYSLLAGGKRVRPIL
CIASCELVGGDEELAMPTACALEMIHTMSLIHDDLPCMDNDDLRRGMPTSHKVFGEDTAV
LAGDALLALAFEHVARNTKNVSSDRMVQALAELGSAVGSKGLVAGQVVDIESEGKEVSLS
TLEYIHVHKTAKLLEAAVVCGAIMGGADATSVERLRKYARSIGLLFQVVDDILDMTKSSE
ELGKTAGKDLTSDKATYPKLIGIDEAKKFAAQLTDQANQELGFYDPVKAAPLYHLASYIA
SRQN
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggccttcttctctgtaacaatttcttgctacgacaatttacttctgaaaaaatccatc
aatggcctatacacccaacctagagcctcattagaccacatcaagttttttcccatgaaa
actcaagcaacctatgctgcaaacccatctttcgagcaatcgtttagagcccacgaagaa
aacaacaagccacaaaaggtccctttaccgccattcggatttaaggagtacatgatccgg
aagggaaatcaagtgaacaaagcactagatgaggcagtgcccttgcaacatcccagaaaa
atccatgaagccatgagatattctctccttgcaggtggaaagcgtgtacgtccaatttta
tgcattgcttcgtgtgaattagtgggaggagatgaggaattagcaatgccaacggcttgt
gcactggagatgattcacaccatgtcgctaatccatgatgatcttccttgtatggacaat
gatgatcttagacgaggtatgcccacaagccataaagtttttggtgaagatacagcagtt
cttgctggtgatgcactcctagcacttgcctttgagcacgtagctagaaataccaagaat
gtctcgtcggaccgcatggtccaagcccttgctgagcttggatccgctgttggatcgaaa
ggtcttgtggcaggtcaggttgtggacattgaaagtgagggtaaagaagtgagtttgagc
acactggagtacattcatgtccataaaacagcaaagcttttagaggcagcagttgtttgt
ggggcaataatgggaggggcagatgctacaagcgttgaaagacttagaaagtatgctaga
tctatcggattgttgtttcaggtggtggatgatatattggatatgaccaagtcctccgag
gagctaggaaagaccgccggcaaggatttgaccagtgacaaggctacataccctaagctg
atcggcatagatgaggccaagaaatttgctgcccagttgactgatcaagctaatcaagaa
cttggtttctatgatcctgttaaggctgccccattgtaccatttggctagctatattgct
agtcgacaaaattaa
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