Populus trichocarpa (black cottonwood): 18099840
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Entry
18099840 CDS
T01077
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
18099840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18099840
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
18099840
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
18099840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
18099840
NCBI-ProteinID:
XP_024459466
LinkDB
All DBs
Position
6:3905059..3926719
Genome browser
AA seq
1700 aa
AA seq
DB search
MAALEGATVSVDSVAFSFLTDEEVHKHSFVKITSARLLDTLDKPVPGGLYDPAMGPLGDE
PCKTCGQRSTNCTGHCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFRADSNQVEKFVS
QLELIIKGDVVGAKRLDSFSPIEASLPEDSDGSSESCSTIHSGARHPNNEQSKQSEWTSL
QLSEAMSILNNFLKLESKKCKNCSASNPNIRKPTFGWFHWAGLSNAAIRSNLIKQQTIEG
PFGGAFEELIDAEDATKSPSNKESATNRNLKEHQKLQHQFTSQKDALSSQLLPSEAMDIL
KLLWKNEARLCSLMSDIQQQGVGKKKAGHSMFFLNTVLVPPIKFRPPTKGGDSVMEHPLS
VLLSKVLELNGSLADAHRSNDFPLIARRWLELQQSLNVLFDSNTAKGQKDVISGICQILE
KKEGMFRQKMMGKRVNYACRSVISPDPYLDVNEIGIPPCFAVKLTYPERVTPWNVAKLRN
AVINGAESHPGATHYVDKLSTTKLPLNRKMRVSVARKLSGRSVDYEYEGKIVYRHLQDGD
IVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRA
EGYNIVNANNQYVRPSNGEPIRSLIQDHIISAVLLTKKDTFLTEDEVYQLLYSSGVSNAR
PTSFSGKAGRKVIFLSYEDEIETVDPAIRKPIYLWSGKQLITAVLNHITRGHPPFTVEKG
GKLSYDFFKSKIKNGKSSNGEKVGVSKPMKEKESGKVNPKENQLEDDKMIIFRNVLVQGV
IDKAQFGEYGLVHTVQELFGAKAAGTLLSVFSRLFTAYLQMHGFTCGVDDLLITKIKDDE
RKKQLENCEKCGEQIHRKFIGIKDENIKIDPLELQSNIEKTIRSDGESALTYLDRQMTNE
LNSKTSSGVINELLSEGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVP
RMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGY
LQRCLIKNLECLRIGYDHTVRDADGSIVQFYYGEDGVDVHQTGFIAKFEALAANREIIYE
KSDELGTCNAYISELPKALKEKAETFLRKIAKEQSSLHDPTKDRSSNLVEHDFYKLLKQK
FFTSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASADI
KTPIMTCPLHEGRTKEDAERLSDKLKKVTVADIVESMEVSVMPFAVQNDDICRIYKLKMK
LYTPAHYPQHADISVENWEETLEVLFVRELEDAIQNYLVLLSKISGIKNFLKESHSGTPI
EAEEDVSGNISREGENDDDSDDEEGEEADDLGLDVQKRKQQVTDEMDYDDGSEGVLNEDE
GDLSGSQAPSGSESDTEPADKESEISNTDMVDYDSEYFEKPTHLGNYSKPKSRKKTSESS
SQVEMHSKLKSTEKKKQKAKGKKVRSKLVKKDFDRSIFVEAKGLHFEIHLKFTNEPHILL
AEIAQKTAKKVCIQNPGKVQRCQVTDCKENQVIYYGKDPKRRIDIEPGEKQKIPALHTIG
VDFNTFWKMQDHLDVRYMYSNSIHGMLKAYGVEAARETIIREIKHVFNSYGISVNTRHLS
LIADYMTHTGEYRPMSRIGGISESISPLSKMSFETASKFIVEAALHGEVDNLEAPSARVC
LGLPVKMGTGSFDLMQKLEI
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggctgccctagagggtgcaactgtgtcagttgattcggtagcgtttagcttcttaacg
gatgaagaggttcataagcatagttttgtaaagattaccagcgcgagattgcttgatact
ttggacaaacctgtgcctggtggattatatgacccagcaatggggcctctaggggatgag
ccttgcaaaacatgcggtcaacgttcaactaattgcacaggtcattgtggccatatagat
ctgattagtccagtttacaatcctctgctctttaattttcttcacaaacttctgcaaaga
acctgtttcttctgctttcattttagagcagatagcaaccaggttgagaaatttgtttct
caattggaactcatcataaaaggtgatgttgttggggctaaaaggttggattctttctcg
ccaattgaagcctcattgccagaagacagtgatggcagcagtgaatcttgttctacaatt
cattcaggagcacggcatccaaacaatgagcagtcaaagcagagcgaatggacctccctt
cagttatctgaagcaatgtctatcttaaataattttctgaagttggaatcaaagaagtgc
aagaactgttcagcatcaaatcctaatattcggaagcctacttttggttggtttcattgg
gcaggtttatcaaatgcagctattagatcaaatctgattaagcagcagacaattgaaggg
ccatttgggggtgcatttgaagagttgatagatgcagaagatgcaaccaaatctcctagt
aacaaagagtctgccacaaacaggaatttgaaagaacaccagaaattgcaacatcagttc
actagccagaaagatgctttgtcctcgcagttattaccatcagaagcgatggatatttta
aagcttttgtggaaaaatgaagctcgactctgctcattgatgagtgacattcagcagcaa
ggagtaggaaagaaaaaggcaggacattctatgttctttctgaacactgttttagtgcct
ccaatcaaattcaggcctccgaccaagggaggcgactctgtgatggaacatcctctatct
gttttgctgagcaaggtgctggaattgaatggatctttggcagatgcgcatagaagcaat
gatttcccattaatagctaggcggtggttggaacttcagcaatctctaaatgtcttgttt
gattccaatactgccaagggtcagaaggatgtgatttctgggatatgccagatacttgag
aaaaaggagggtatgtttcggcagaaaatgatgggaaagagggttaattatgcatgccgg
tctgttatttccccagatccttatttagatgttaacgaaattggaattcctccgtgcttt
gcagtgaagttaacatatcctgagagagtgacaccctggaatgttgccaaattgagaaat
gctgtaatcaatggtgctgaaagtcatcctggagctacacactatgtggataagctgtct
actactaagcttccactgaatcgaaaaatgcgtgtttctgtagcaaggaaattatccggg
aggagtgttgattatgaatatgaagggaaaattgtatatcgccatttgcaagatggagat
attgtgcttgtcaatcgacagcctacacttcacaaaccaagtataatggcacatgtagtt
cgtgtattgaagggggagaagacactacgcatgcactatgcaaattgcagtacatacaat
gctgattttgatggtgatgaaatgaatgttcatttcccacaagatgaagtttctcgagct
gaaggttacaacattgttaatgcaaataatcaatatgtcaggccttccaatggcgaacca
attagatccttgattcaggatcatattattagtgctgtgcttttaacaaagaaggacact
tttttgactgaggatgaagtttatcaactgctttatagttctggcgtgtcaaatgctcgt
ccaacatctttcagtggcaaagctggccggaaagttatattcttaagttatgaagatgag
attgaaaccgttgatcctgcaataaggaaacccatttatctgtggtcaggaaaacagttg
attactgctgtgttgaatcacattacaaggggccatccaccattcactgttgagaaaggt
gggaagctctcgtatgatttttttaagagtaaaattaagaatggcaaatctagcaatgga
gaaaaagttggtgtaagcaaaccaatgaaggaaaaagagtctggcaaagtcaatccaaaa
gaaaatcagcttgaagatgataagatgattatctttaggaatgtattggtccaaggggtg
attgacaaggcccagtttggtgagtatggtttggtgcacacagttcaagaattgtttggt
gcaaaagcagctggcaccctgctctctgttttcagtcgtttattcactgcttatttgcag
atgcatggattcacatgtggagttgatgatcttttgataacgaaaattaaagacgacgaa
aggaagaagcaacttgaaaactgtgaaaagtgtggggaacaaattcatcgtaaatttatc
ggaatcaaggatgagaacattaagatagatccattggaattacaatcaaatatcgagaaa
actatacgcagtgatggtgagtctgccttgacatatctggataggcagatgacaaatgaa
ctaaattccaaaacaagctcaggagtcatcaatgagctgttgtctgaagggttgctaaaa
ccctctggaaagaattgcatatcacttatgactacatctggggctaaaggtagcaaggtc
aatttccaacagatatcttcttttctaggccaacaggagttggaaggtaaaagagttcct
cgaatggtttctggaaagacattgccctgctttcatccatgggattgggcagcccgtgct
ggaggctatattattgatcgttttctcaccggtctgcgtcctcaagaatattatttccat
tgtatggctggtcgtgaagggttggttgatacagctgtcaaaacatctcgcagtggatac
ctccaaagatgcctgattaaaaatcttgagtgcctcagaatcggctatgatcatacagtt
cgtgatgctgatggctcaattgttcaattttactatggagaagatggtgtggatgttcat
caaacgggctttattgctaaatttgaagccttggcagcgaatcgagaaataatatacgaa
aaaagtgatgagcttggcacatgtaatgcttatatttcggaattgcctaaagctcttaaa
gaaaaagcagaaacattcctacgtaaaatcgcaaaggagcagagttctttacatgatccc
acaaaggatcggagttctaatttagtggaacatgatttctataagttactgaagcaaaag
tttttcacgagtcttgcacaaccaggagaaccagttggtgtccttgctgctcagtctgta
ggagaaccatcaacacagatgacgctgaacactttccatctagccgggcgtggtgaaatg
aatgtaacacttggaattccacgtctccaagagattttgatgactgcttcagctgatatc
aagactccgattatgacctgccccttgcatgaagggagaactaaagaggatgctgagcgc
ctttctgataagttgaagaaggtcaccgtagccgatatagtagagagcatggaagtatct
gtcatgccatttgctgttcagaatgacgacatttgcagaatttataagcttaaaatgaag
ctttatacaccagcgcactacccacaacatgctgatatatcagtagaaaattgggaagaa
acccttgaggtgttgtttgtgagagagttggaggatgctatacaaaattatctggttttg
ctttctaaaattagcggcattaagaattttttgaaggaatcacattcagggacgccaatt
gaagcagaagaagatgtttctggcaacatatcacgcgagggtgaaaacgatgatgatagt
gatgatgaagaaggggaagaggctgatgatctaggtttagatgtgcagaaaagaaaacag
caagttacagatgagatggattatgatgatggctctgagggggtactgaatgaagatgaa
ggggatttatcaggaagccaggctccatctggatctgaaagtgatactgaaccggctgat
aaagaaagtgagatcagtaataccgatatggttgactatgacagtgaatattttgaaaag
ccaacacatcttggaaattactctaagccaaagtcaaggaagaaaacctcagaaagttca
tcacaagtcgaaatgcattctaagctaaagtcaacagaaaagaagaaacaaaaggccaag
ggaaagaaagttagatcgaaattagttaaaaaggactttgatagatcaatctttgtggaa
gccaagggattgcactttgaaatccatcttaaattcaccaatgagcctcatattttactg
gccgagattgctcagaagacagccaagaaggtctgtatccagaatcccgggaaggttcaa
cggtgtcaagtgactgattgcaaagaaaatcaagtgatttactatgggaaagaccccaag
agaagaattgatattgaacctggggaaaaacaaaaaatcccagcgcttcatacaattgga
gtggacttcaatacattttggaaaatgcaagatcaccttgatgttaggtatatgtattca
aatagcattcatggtatgttgaaagcttatggagtagaggccgcaagagagacaatcatt
agggagataaagcacgtgttcaattcttatggaatatccgttaatacacggcatttgtct
cttattgctgattatatgacccataccggtgagtaccgtccgatgagccgtattgggggc
atatcagagtcgatatcacctttaagtaaaatgtcttttgagacagcgtccaaattcata
gttgaagcagcattgcacggggaggtcgataatttggaagctccatctgcaagggtttgt
cttggattgccagtgaaaatgggtactggatcttttgatttgatgcagaaactggaaatt
tga
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integrated database retrieval system
