Populus trichocarpa (black cottonwood): 18103722
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Entry
18103722 CDS
T01077
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18103722
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18103722
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18103722
03036 Chromosome and associated proteins [BR:
pop03036
]
18103722
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
18103722
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
18103722
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
18103722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
HEAT_EZ
Htt_N-HEAT_1
Vac14_Fab1_bd
PDS5
Cnd1
RTP1_C1
Adaptin_N
CLASP_N
Motif
Other DBs
NCBI-GeneID:
18103722
NCBI-ProteinID:
XP_006376763
LinkDB
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Position
12:complement(6982199..6994036)
Genome browser
AA seq
516 aa
AA seq
DB search
MATIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMADELGVFIPYVGGVEYANVLLPPLETLCTVEETCVRDKSVESLCRIGTQMIEQ
DLVDHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRALYSQLCQDDMPMVR
RSAATNLGKFAATVEPVHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILNPEVAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQW
KQHRERTRKAHWPAYIDWDFYPPPHPNSPKSVDLLF
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgatcgacgagcctctatacccgatcgccgttctaatcgacgagttaaaaaac
gaggacattcagctccgattgaactcaattcgtcgcctttctaccatcgctcgtgccctc
ggcgaggagcgaactcgcaaggaattaattcctttcctaagcgagaataacgacgacgac
gacgaagtgcttctcgctatggctgatgaattaggagtttttattccctatgttggcggt
gttgagtatgccaatgtgctgcttccgcctctcgagacgctctgcaccgtcgaggaaact
tgtgttagagataaatcagtcgagtctttgtgtagaatcggaacacagatgatagagcaa
gacttagtcgaccattttattccgctcgtcaagagattggcagcgggtgaatggtttact
gcacgggtttcgtcctgtggtttgtttcatattgcttatcccagtgctccagagacttta
aagactgaattacgagccctatacagtcagctttgtcaagatgatatgcccatggttcgt
agatctgctgccactaatctaggaaagtttgctgctactgttgagcctgttcatttgaag
actgatatcatgtctatatttgaggatttgactcaggatgatcaagattctgttcgatta
ttggctgttgagggttgtgcagctcttggaaaattgctggaaccccaagattgtgtggcg
catatccttccagtcatagttaatttctcacaggataagtcttggcgtgttcgctacatg
gttgcaaatcaattgtatgagctctgtgaagctgttggtcctgagcctaccaggtctgac
ctggttcctgcatatgttcggctacttcgtgataatgaagctgaagtacgtatagctgca
gcaggaaaagtaactaagttttgcaggattttgaatccagaagttgcaattcagcatatt
cttccttgtgtaaaagatttatccacagattcatcccaacatgttcgttctgctttggct
tccgttataatgggaatggctcctgttttggggaaggatgcaacaattgagcagctgctt
ccaattttcctctctctcttgaaagatgaatttcctgatgttagattgaatattatcagc
aaacttgatcaagtcaatcaggtgattggaattgatttgctttcccaatctctattgcca
gcaattgtggagcttgcagaggatagacattggagagttcggcttgcaattatagaatac
ataccattgctggcaagtcagttgggagtagggtttttcgatgataagcttggtgctctg
tgcatgcaatggttgaaagataaggtttactcaattcgtgatgcagctgctaacaatgtg
aagcgccttgctgaagaatttggcccagattgggcaatgcagcacatagttcctcagtgg
aaacagcatagggaaagaacaagaaaagcacattggccagcatatatagattgggacttc
tatccccccccccacccgaactctcccaagtcagttgacctactgttttga
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