KEGG   Populus trichocarpa (black cottonwood): 18105995
Entry
18105995          CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18105995
  09124 Replication and repair
   03420 Nucleotide excision repair
    18105995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    18105995
   03400 DNA repair and recombination proteins [BR:pop03400]
    18105995
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     18105995
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18105995
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 18105995
NCBI-ProteinID: XP_006373571
UniProt: B9N3V2
LinkDB
Position
16:complement(165650..168340)
AA seq 197 aa
MEKGGGKGFSLPSKEPKSSLKSSSTKGKDDSNNGRKIHFESEGNLSKGGKGGKIANGGKS
PMTKEPPPLELKIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIKLPVSFDKGLQ
YAKNGAHYTNPQSVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVPSLKSKASTLR
EPLKDILGELAKFKQPA
NT seq 594 nt   +upstreamnt  +downstreamnt
atggagaaaggaggaggaaaagggttctctctcccatccaaagagcctaagtcttctctc
aagtcctcatcgaccaaaggaaaggatgattcaaataatggaaggaaaatccattttgag
tctgaaggtaatttgagcaagggggggaaaggaggcaagattgcaaatggtgggaaaagt
ccaatgacaaaagaaccacctccacttgagctaaaaattgagtcagaactcccacagaat
gccaaacccctgatggattgtgaggctgcacaaatcttacaaggaatccaggaccagatg
gttctgctgtctcaggatccaactatcaaacttcctgtgtcatttgacaaggggctgcag
tatgctaagaatggtgcccattatacaaaccctcagtctgttagacgagttcttgaggct
ttgagaaaatatggtgtctctgatggagagatatctctaatcgccaatgtctttcctgaa
actgctgatgaagcttttgcacttgtcccatctttgaagtctaaggctagcacacttaga
gaacccctgaaggacattttaggcgagctagctaagtttaaacagccagcatga

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