Populus trichocarpa (black cottonwood): 18106554
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Entry
18106554 CDS
T01077
Name
(RefSeq) phytoene synthase 2, chloroplastic
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00906
Carotenoid biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
18106554
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pop01006
]
18106554
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
18106554
Prenyltransferases [BR:
pop01006
]
Terpene biosynthesis
Squalene/phytoene synthase
18106554
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
18106554
NCBI-ProteinID:
XP_006372484
UniProt:
B9MWW1
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Position
17:complement(14008270..14012311)
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AA seq
435 aa
AA seq
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MTVALFWVGSANPSTEVSNCLRFLDSVRVLDTTKFGNSRDRSLFFKLGEKKGRKQKWKSC
SVNPDLGYLGGRSNGSKLPVISSMVASHAGEMAVLSSEEMVYNVVLKQAALVKKELKSRG
DLDVKPDVVLPGTLSLLSEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRT
DELVDGPNASHITPTALDRWEARLEDLFQGRPFDMMDAALADTVGKFPVDIQPFKDMIQG
MRMDLRKSRYQNFDELYLYCYYVAGTVGLMSVPVMGIAPESQASTESVYNAALALGIANQ
LTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGKVTDKWRNFMKNQIKRARMFFDE
AEKGVTELSAASRWPVWASLLLYRQILDEIEANDYNSFTKRAYVRKAKKIVALPVAYAKS
LISPSSRVPSPLAKT
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgactgtagcattgttttgggttggtagtgccaatccaagcacagaggtttccaattgt
cttcgattcctggattctgtcagggttctggatacaacgaagtttggtaattctagagat
cggagtttgttttttaagcttggagaaaaaaagggtaggaaacagaaatggaagtcatgc
tctgtcaatccagatttggggtatttaggtggtagaagtaatggaagcaaattgcctgtg
atatcaagcatggtagcaagccatgctggagaaatggctgttttgtcatccgaggagatg
gtttataatgtggtgctgaagcaggcagctctggttaagaaagaactgaagtccagaggt
gatctggatgtgaaaccagatgttgttcttccagggactttgagcttgttgagtgaagct
tatgatcggtgtggagaagtttgtgctgagtatgccaagactttttacctgggaactctg
ctcatgacccctgaacggagaagggctatttgggccatatatgtgtggtgtaggaggacc
gatgagcttgttgatgggcctaatgcttcacacattacaccaacagctttagataggtgg
gaggcaaggttggaagatcttttccaagggcgtccatttgatatgatggatgctgctcta
gcagacacagttggaaaatttcctgttgatattcagccattcaaagatatgattcaagga
atgaggatggacttgaggaaatcaagataccaaaactttgatgagctctatctttactgt
tattatgttgctgggactgttggactgatgagtgttccagtcatgggcattgcacctgaa
tcacaggcttcgaccgagagtgtttataatgctgccttggcattggggatagccaatcaa
ctcactaacatactcagggatgtaggagaagatgcaagaagaggaagggtttatctacca
caagatgagctggcacaggcagggctttcagatgatgacatatttgctggaaaggtgaca
gataagtggagaaactttatgaagaatcaaattaagagagcaaggatgttctttgatgag
gctgagaaaggagtgacagaattgagtgctgcaagtcgatggccggtttgggcatccttg
ctgctatatcgccaaatactagacgagatagaggctaacgattacaacagcttcacaaag
agggcatatgtgagaaaagccaagaagatagttgctttgccagttgcgtatgcaaaatcc
ctcattagtccatcatcgagagtgccatctcctttggcaaaaacataa
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