Populus trichocarpa (black cottonwood): 7455807
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Entry
7455807 CDS
T01077
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
7455807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7455807
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
7455807
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
7455807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
7455807
NCBI-ProteinID:
XP_024444830
LinkDB
All DBs
Position
1:complement(2296430..2314193)
Genome browser
AA seq
1173 aa
AA seq
DB search
MAKKGGEFKELEELVRHHIDSFDYMVDRGLEIMLDNIKPVRIYDPHTDTCLSLYLSNPRI
NAPIKDVRSRTNRKRLLPFECRQAKVSYTGKFEADVCFQYDGRPVIREKYNFGQFPIMLK
SKLCYLRSADPQQLVSLKEEASEVGGYFILNGIERVFRCLIMPKQNYPMSMTRGSYRERR
EGHTDKAVVIRCVREYQSSLTDHSSVTVRLYYLRNGSARVGFWVRGREYLLPVGIVLKAL
VETTDREIYENLTSYYDEKYEEVKGAVGSQLLGERAKIILDEVRVAALFTQDDCLQHIGE
HFQPVVDELENKTPYTVAHAVLKDYVFVHLPNFHDKFSLLIFMLQKLFSFVDHTSAPDNP
DSLQNQDILLPGHLMTIYLKEKLEDWLRKAKSLVQDELTKNNTFNFLAVGDVRKVMDKNS
PVTVSTAVESMLRSGRLATQTGLDLQQRAGYTVQAERLNYLRFLSFFRAVHRGASFAGGR
TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCSCRVTSYFDSQGVVKDFFDIRKSILG
VLTSLGMIASLPKLVQAGPPKALSVLLDGRVIGSLPSSEIEKVIAHLRRLKVSATSAIPD
DMEVGYVPLSIGGAYPGLYISTYPSRFIRPVRNISIPCEERQDIELIGPFEQVFMEIKCP
DGGNGGRSNAFPATHEEIHPTNMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQSL
RFRADQKIYHLQTPQTPIVRTGAYTKYSIDEHPTGTNAIVAVLAYTGYDMEDAMILNKSS
VDRGMFHGQIYQTETIDLSDEGSRSDRSHRRFRRSNTDRSSHSLIDSDGLPYVGQIINPN
EPYCSIYNDITNTSKPKYRKGSEPAIVDYVAVDTKSKKHLQKVNIRFRHPRNPIIGDKFS
SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESLAAKGGSLNGN
FVDATPFASTVRASNAGEAKSEPESLVDELGKMLKSKGFNHHGVEVLYSGVYGTELTCEI
FIGPVYYQRLRHMVSDKFQVRSTGPVDQITRQPIKGRKRGGGIRFGEMERDSMLAHGAAY
LLHDRLHTCSDYHIADVCSICGSILTTHYQPQRRIVRDIGGLPPVKAPKKVVCHACQTSK
GIETVAMPYVFRYLAAELAAMNIKMTLHLNDGA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagggtggagaattcaaggagctggaagagctagtgaggcaccacatagat
tcctttgattacatggtggatagaggattggaaatcatgttagataacatcaagcctgtc
agaatttatgatcctcacactgatacctgtctctcactatacttgagtaaccctcgaata
aatgctccaataaaggacgttcgttcaaggacaaatcgtaagaggctacttccttttgaa
tgtcgacaggcgaaggtttcgtatactgggaagttcgaggcggatgtttgctttcagtat
gatggtagaccagttatcagagaaaagtataattttgggcagtttcctataatgttgaag
tcaaagctttgttacttgcgaagtgctgatccccaacagcttgtttccttaaaagaagag
gcgtcagaagtgggtggttacttcattttgaatgggattgagagagtttttcgatgtcta
attatgccgaagcagaactatccaatgagtatgacgcgaggttcatatcgtgaacgaagg
gaaggacatacagataaagcagttgttataaggtgtgtaagagaatatcaatcttcatta
acagatcactcttcagtaacagttagactgtattatcttcgcaatggaagtgccagagtt
ggattttgggtaagaggaagggagtacttgcttcctgttggcattgtgttgaaggccctt
gttgagaccacagaccgggaaatttatgagaatctgacaagttactatgatgagaaatat
gaggaggtaaaaggagctgttggctctcagcttctaggtgaaagggcgaaaattattctc
gatgaagttcgggttgcggctcttttcactcaggatgactgtctgcagcatattggggag
cactttcaacctgttgtggatgagttggaaaacaaaactccatatactgtggcccatgct
gttttgaaagattacgtgtttgttcatcttcctaattttcacgacaaattcagtctgctg
atctttatgttgcagaaacttttctcttttgtcgatcatacttctgcaccagacaaccca
gattccttgcaaaatcaggacatcttacttcccgggcacctgatgaccatttatctcaag
gagaaactagaagactggttgcgtaaggcgaaatcacttgttcaagatgagctaacaaaa
aataacacttttaatttcttggcagtaggagatgtcaggaaggtcatggataaaaattcc
ccggtaacagtcagtacagctgtggagtctatgttgagatctggaagactggcaacgcaa
acaggtcttgatttgcagcagagggctggttacactgttcaagcagagaggctcaattat
ctgcgctttctttcttttttccgtgctgtacatcgaggagcttcctttgctggtggtcgc
acaacaagtgtgcggaagttgcttcctgaatcatggggttttctttgcccagtccacaca
cctgatggggagccatgtgggttgctgaaccacatgacttgttcttgtcgtgttacatca
tattttgattcgcagggagttgttaaagatttttttgatataagaaaatctatccttggt
gttttgaccagtcttggaatgattgcttcattgccaaagcttgttcaagctggccctcct
aaggctctttctgttcttttggatggtcgtgtcattggctctcttccttccagtgaaata
gagaaagttattgctcatttgcgaagattaaaagtgtcagcgacttcagcgattcctgat
gatatggaagttggatatgttcctttgagcattggtggtgcatatccaggtttatacatc
tccacatatccttccagatttattcgccctgttagaaatatttctatcccttgtgaggaa
cgtcaagatattgaacttattggaccatttgaacaggtttttatggaaataaaatgtcca
gatggtggaaatggtggaagaagtaatgcctttcctgcaactcatgaagaaattcaccca
acaaatatgctcagtgtggttgctaatctaacaccttggtcagatcataatcaaagtcca
cgaaatatgtaccagtgtcagatggctaaacaaacaatggctttctctttacaatctctc
cgcttccgtgctgatcagaagatttaccatcttcagactcctcaaactcccattgtacgt
acaggagcatacacgaaatatagcatcgatgagcatccaacagggacaaatgctattgtt
gcagtgcttgcatatacaggatatgatatggaggatgccatgatcttgaacaagtcctct
gtagatcgtggcatgtttcatggacaaatataccagacagaaacgatcgatttatccgat
gagggcagcaggtcagatcgatcccacagaagatttaggaggagtaatactgataggtca
tcgcattccttgattgattcagatggacttccatatgttggtcagataataaatccgaat
gagccatattgtagcatttataatgacataacaaatacatcaaaacccaagtatcgaaaa
ggttcagagcctgctattgttgactatgtagctgttgatacgaaaagcaagaagcacctt
cagaaggtgaatattcgttttcgtcatcctagaaaccctatcattggtgataagtttagc
agtaggcatggacagaagggtgtttgctcccagttatggccagatattgatatgccattt
tctggagttactgggatgcgtcctgatctgattatcaatccccatgcttttccttcaaga
atgacaattgcaatgcttttggaatcccttgctgccaagggaggtagcttaaatggaaac
tttgtagatgctacaccatttgctagtacagtgagggcatctaatgcaggagaggccaaa
tcagaacctgaatcacttgttgatgaacttggcaagatgctaaaatctaagggctttaat
catcacggcgtggaggttttgtacagtggggtttatggaacagaactcacatgtgaaatt
tttattggtcctgtttattatcagcgtcttcgccacatggtttcagacaaatttcaggtc
cggtcgactggtccggtcgaccagattaccagacagcctattaaaggaagaaagcgtggt
ggaggtattcgttttggagaaatggaacgagattcaatgcttgcccacggagctgcatac
ttgttgcatgataggctccatacttgctctgattatcacattgctgatgtatgttctata
tgtgggagcattctaacgacacattaccaaccacagaggcgaatagtgcgtgatattggt
ggattacctcctgtgaaggctcccaaaaaagtggtatgccatgcatgccaaacaagcaaa
gggatagaaactgttgcaatgccttatgtctttagatatttagctgccgaattagcagct
atgaacataaaaatgaccctccacttgaatgatggagcatga
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