Populus trichocarpa (black cottonwood): 7471510
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Entry
7471510 CDS
T01077
Name
(RefSeq) ABC transporter D family member 1
KO
K25819
ATP-binding cassette, subfamily D (ALD), peroxisomal ABC transporter [EC:
7.6.2.4
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop02010
ABC transporters
pop04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
7471510
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7471510
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
7471510
Enzymes [BR:
pop01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
7471510
Transporters [BR:
pop02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
Others
7471510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_29
AAA_21
AAA_23
SMC_N
AAA_16
nSTAND1
AAA_22
Mg_chelatase
AAA_27
AAA_7
Rad17
AAA_30
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
7471510
NCBI-ProteinID:
XP_024456070
LinkDB
All DBs
Position
5:complement(5118742..5133987)
Genome browser
AA seq
1328 aa
AA seq
DB search
MPSLQLLQLTEHGRGILASRRKSLLFAAGILAAGGTAVYVQSRIRSKKSDSFLYYNGIKD
DKKISDKLVTNGKKTVQKKGGLKALQILASVLLSHMGKTGAKDLLAMIAIAVLKTTLSNR
LAKVQGFLFRAAFLQRVPLFFRLISENILLCFLLSTINSTSKYVTGTLSLCFRKILTKVI
HAHYFENMAYYKISHVDGRITNPEQRIASDVPRFCSELSELVLDDLTAVTDGLLYTWRLC
SYASPKYLFWMVAYVLGAGTLIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFY
GGENREEFHIQQKFKTLIGHMRTVLHDHWWFGMIQDFLLKYFGATVAVILIIEPFFAGQL
RPDASTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELIAVSREL
SNGDKSSLQRSGSRNYFSEANYVEFFGVKVVTPSGNVLVQDLTLKVDSGSNLLITGPNGS
GKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQE
IEPLTHSGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAIL
DECTSAVTTDMEERFCAQVQAMGTSCITISHRPALVAFHDVVLSLDGEGGWLVNYKGKDS
PALTEAGGDLTGDFETERKNDAMIVQKAFSTSDKATHSYISEVIAASPNIDHNVLLPIVP
PLQRAPRALPLRVAAMFKILVPTILDKQGAHLLAVAFLVISRTFVSDRIASLNGTTVKFV
LEQDKASFVRLIGVSVLQSAASSFIAPSLRHLTTRLALGWRIRLTQHLLKNYLRNNTFYK
VFHMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPLVDILWFTWRMKLLTGQRGVAILY
TYMLLGLGFLRAVTPDFGDLASEEQQLEGTFRFMHERLRTHAESVAFFGGGKREKAMIES
RFRELLDHSMLLLKKKWSYGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAMTSTQGELA
HALRFLASVVSQSFLAFGDILELHKKFAELSGSINRIFELEELLDAAQSGDSLNSKLSQS
KNIELYSKDAISFMEVDIITPAQKLLARQLTFDIEQRKSLLLTGPNGSGKSSVFRVLRGL
WPIASGRIAKPSQHISKETGSGCAVFYVPQRPYTCLGTLRDQIIYPLSRDEAEVMTLELY
EKGKLSTEITNMLDSCLKNILENVRLNYLLEREGGWDANMNWEDTLSLGEQQRLGMARLF
FHKPKFAILDECTNATSVDVEEQLYRLASDMGITFITSSQRPALIPFHSLELRLIDGEGH
WELRAIKQ
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgccttctcttcaactcttgcaattaaccgagcatggtcgaggcattttggcctctaga
aggaaatctctacttttcgcggctggtatcttagctgctggtgggactgctgtgtatgtg
cagtcacggattaggtctaagaaatctgattcttttctttattacaatgggatcaaagat
gataaaaagatatcagataagctggttactaatggcaagaaaactgtacaaaagaaagga
ggtttaaaggcactgcaaattctagcctcagttcttctgtcccatatgggtaaaacaggt
gccaaggaccttttggctatgattgccatagcagtcttgaaaactactttgagcaacaga
ttagcgaaagtgcagggttttttattccgtgctgcttttctccaacgtgtaccgttattt
ttccggctgatatctgaaaatatcttactttgtttccttctatccaccattaattctact
tcgaagtatgtaactggaaccttaagtctctgtttccgaaaaatactgacgaaagttatc
catgcacattattttgagaacatggcatactataaaatatcacatgttgatggtcggatt
actaaccctgaacaacgtattgcaagtgatgtaccgaggttctgttcagagttgagtgaa
cttgtccttgatgatttgactgcagttactgatggtctgctttatacttggcgcctttgt
tcatatgccagccctaagtatttgttttggatggtggcctatgtattgggagcaggaacc
ttgattagaaacttctctcctgcttttgggaagctaatgtctaaagaacagcagttagaa
ggtgaatataggcagctacattcccgtttgaggacccatgctgaaagcatagcattttat
ggtggagaaaatagagaagaatttcatattcagcagaagtttaagaccctgattggacac
atgagaactgtcttacatgaccattggtggtttggaatgattcaggactttttattgaag
tattttggtgctactgtagctgttattttgattattgagcctttttttgctggccaactt
agacctgatgcttcaactttgggaagggcagaaatgttgagcaatttaagataccatacc
agcgtgataatatcactatttcagtccctgggaactctttctataagttcaagacgactg
aatcgtctcagtggttatgctgaccgcattcatgaattaatagccgtatcgagagagctg
agcaatggtgataaatcatcactgcaaagaagtggaagcaggaactacttcagtgaagct
aattatgttgagttttttggtgtcaaggttgtcaccccaagtggtaatgttttggttcaa
gacctgactcttaaagttgattcaggatctaatctattgattacaggtccaaatggtagt
gggaagagctcacttttccgagttctaggtggcctgtggccattggtttctggccatatt
gtgaaaccaggagttggttctgatcttaacaaggagatcttctatgttccacaaagacca
tacactgctgtaggcacactccgtgatcaattaatttatcctcttactgcagaccaagag
attgaaccactgacccatagcggaatggtggagctgttaaaaaatgttgaccttgagtat
ctattagaccgttatccacccgagaaggaggttaattggggtgaggaactgtcactgggg
gagcaacaaaggttagggatggccaggctgttctaccataagccaaaatttgcaattctt
gatgagtgcactagtgctgtgactactgatatggaggaacgtttttgtgctcaagtacaa
gctatgggaacatcttgcataaccatatctcatcgtccagctctagttgcatttcatgat
gtggttttgtccttggatggagaaggaggctggcttgttaattacaaagggaaggattct
ccagccctgactgaagctgggggtgatctcacaggggattttgagacagaacgcaaaaat
gatgccatgatagttcaaaaagcattttccacaagtgataaggccacacactcgtatatt
tcagaagtgatagcagcatcacccaacatagaccataatgttctattgcccattgttcca
ccacttcaaagggctccaagggcattgccactgagagtagctgccatgtttaaaatattg
gtaccaactatacttgacaaacaaggggcacacttattagcagttgctttccttgttatc
tcaagaacatttgtctcagatcggattgcctcattgaatggtacaactgtaaagtttgtt
ttggagcaggacaaagcatcttttgttcgattaataggtgttagtgttcttcaaagtgct
gcgtcgtcttttattgcaccttctttgagacacttgacaactcggctggcccttggatgg
aggattcgtttgactcaacatctactaaagaactatttgagaaacaatacattttacaag
gttttccacatgtctagcaaaaatattgatgcagatcagagaataacacatgatctggaa
aagttaaccacggacttgtctggactggtaactggaatggtgaagccattagtagatatc
ttgtggttcacctggagaatgaagctcttaacaggtcagaggggagttgccatattgtat
acttatatgttgcttggtttgggttttctgagggctgttactcctgattttggtgatctt
gctagtgaagagcaacaacttgaaggaacctttaggttcatgcatgagagactgcgcaca
catgctgaatctgttgctttctttggaggtggaaaacgagaaaaagctatgattgagtca
agattcagggaacttcttgaccattccatgttgcttttgaaaaagaaatggtcatatggc
atactcgatgattttgtgacaaagcaactcccacataatgtaacttggggtttgagcttg
ttgtatgccatggaacacaagggagatcgagccatgacctcaactcaaggcgaactggca
catgcattgcggttcttagcatctgttgtctctcaaagctttttagcctttggagacatc
cttgaattgcacaagaagtttgctgagctttctggcagtataaatagaatttttgaactt
gaagagcttctggatgctgctcagtctggggattctttgaatagtaaactatctcaatct
aagaacattgaactttactcaaaagatgccatttcctttatggaggtcgatatcattact
ccagcacagaaattgttggcgaggcagttgacatttgacatagaacaaagaaaaagcctg
cttctaactggtccaaacgggagtgggaaaagttctgtttttagagtcctcagaggtctt
tggcccattgctagtggaaggattgctaaaccatcacaacatattagtaaagagactgga
tcaggttgtgctgtcttctatgttcctcaacgaccatatacatgcttgggaaccttgaga
gatcaaattatctatcctctctctcgtgatgaagcagaagtcatgacactagagttgtat
gaaaaaggtaagctatccaccgaaataacaaacatgctggactcgtgtttgaaaaatatt
ctggagaatgttcggctaaattatctcttggagagagaaggcggctgggatgcaaatatg
aattgggaagacactctctctcttggagaacagcagagattaggcatggcccgcctattc
tttcacaagcctaaatttgccatccttgatgagtgcaccaacgcaacaagtgttgatgtt
gaggaacaactttataggcttgctagtgacatgggcatcacatttattacctcctctcag
cgtcctgctctcataccattccactccctggaattgcggcttattgatggcgagggccac
tgggagcttcgtgcaattaagcaatga
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integrated database retrieval system
