Populus trichocarpa (black cottonwood): 7486075
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Entry
7486075 CDS
T01077
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X3
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7486075
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pop01001
]
7486075
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7486075
03036 Chromosome and associated proteins [BR:
pop03036
]
7486075
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
7486075
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
7486075
Protein kinases [BR:
pop01001
]
Serine/threonine kinases: Other
TAF1 family
7486075
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
7486075
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
7486075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
ubiquitin
Rad60-SLD
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
7486075
NCBI-ProteinID:
XP_024461059
LinkDB
All DBs
Position
7:complement(13396023..13416744)
Genome browser
AA seq
1825 aa
AA seq
DB search
MLSAKENYVMQFLMLYYDAKAEDAVDYEDFDEQYEGPEIQAVSEEDYLLSKKDYMLSEST
LQPPISDDEDYDEGVKEELEKEPVVSDKKLEVQTASLSGSLLGQQDVGVVSGELVSVGFE
SSDVEFVDIHEEETDTVKGSLDKGHTPLPILCIEDGMEILRFSEIFSIHEPLKKGEKRDH
RYSILKEKYTSMDVSDIVEEDEEAFLKDSGQMLPSHLHVNQHDISIFSEDASELARFGSM
HGAIQMSVQIEEQRRNSYLSAEPLNKDVVWKSPLDSKFNPLDQHDWEERILWDNSPVISD
NSVESCDQSGSELGSSFVIETEQVTSPPNLHSEHPVELNENLDNCFWNRSYVLLESFGSG
DYSEPGNLPLLESRCHPQLLRLESRLEEDSSNHVNDRRENNAVELHKSDALRRFSKLTLQ
NRDLMEGSWLDDIIWEPCEANIKPKLILDLQDEQMLFEILDHRDSKHLQLHAGAMIITRP
LKQKVSHELLGCGNRSGWQFNIANDKFYMNRKNSQRLQSNSNKRTAYGIKIHHSAPAIKL
QTMKLKLSNKDLANFHRPKALWYPHDHEVAVKERGKLPTAGPMKIILKSLGGKGSKVHVD
AEENISSVKAKASKKLDFKPSETVKLFYLGKELEDHKSLSAHNVQPNSLLHLVRTKIHLW
PRAQKIPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLSLSNAGMGANLRTYYQK
LSPSDQTGILLRNEKSSLGNVVILEQTDKSPFLGDIKAGCRQSSLETNMYKAPLFPHKVP
PTDYLLVRSAKGKLSIRRIDRVAVVGQQEPLMEVLTPASKNLQAYILNRQLLYLYREFRA
AEKRGMLPWIRADELSAHFPNISETILRKKLKECTILRKNANGHLFWAKKRDFIIPSEEE
LKKMVLPENVCAYESMQAGLYRLKHLGITWLTLPTSVSTAMSQLPDEAIALAAASHIERE
LQITPWSLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRTAPKAPISNAVVKKK
AGAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPDEQIAKQTRWHRIAMIRKLSSEQAS
CGVKVDPTTISKYARGQRMSFLQLHQQTREKCQEIWDRQVQSLSALDGDEIESDSEANSD
LDSFAGDLENLLDAEEFEGDENNYESKHDKGDGVKGIKMRRRPSQAQAEEEFEDEAAEAA
ELCRLLMDDDEAEQKRKKKTRNVGVDAVVTPTKPNFVDNVHWGKKMNKTQPNGSYALKQN
NIRDLKELETLSIKGKMSEKVKTVKKNGAFNTPPLKAKVIMADGLNHIFKEKKSARERFV
CGACGQLGHMKTNKNCPKYGKEPETPSETIDLEKSSRKSTSQDLLNVSQHKLQKKKMISK
NSTKIEAAEGEKSSLAKSLPVKFKCGSTEKFSDKPSDGAADTSNQPTTSNVRPVSSDIDT
GSRATSKVSKIKIFNKVKPENVQVESHKPSIVIRPPMDTERGQSESHKPSIVIRPPTYMD
RDHVDPHKPSIVIRPPAEKDRKKTQKKIVIKQPKEIIDLDQVSQDGSPGYEHRKTKKIVE
LSSFEKPGKTMRFSGESAKRKAREDRRWWEEEEKQRAAERQREDRARRIFAEEMRSREER
EEREKLAEIERYTETIRWDWEEEERQKAKKKTKKKKKKPEISDHLDDFRADRNERRMPER
DRGAKRRPVVDVGNYGADYTPATKRRRVGEVGLANILEGIVDALKDRLEVSYLFLKPVLK
KEAPDYLHIIKRPMDLSTIKDKARKMEYKNRNEFRHDMWQIAYNAHLYNDGRNPGIPPLA
DQLLEICDFLLMEKQDSLSEAEAGI
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atgttgtctgccaaggaaaactatgtcatgcagtttttgatgttgtattatgatgcaaag
gcagaagatgcagttgattatgaagattttgatgaacagtatgaggggcctgagattcaa
gctgttagtgaggaggactatttgttgtcaaaaaaggattatatgttgtctgaatccacg
ttgcagcctcccatatctgatgatgaagattatgatgaaggtgtgaaagaggaacttgaa
aaggaacctgtggtttcggataaaaaacttgaagttcaaacagcttctctatcaggttca
ctcttaggtcagcaagatgttggagtagtttccggagaacttgtctccgtgggttttgaa
agttctgatgttgaattcgtagatattcatgaggaggaaaccgatactgtcaaggggtct
ctagataaaggtcacactccacttcctattttgtgtatagaagatgggatggagatctta
cggttctccgaaatattttctattcatgaacccttgaagaaaggagaaaaaagagatcat
agatattccattttgaaagagaagtatacatctatggatgtttctgatattgttgaagag
gatgaagaggcgtttttaaaggactctggtcaaatgcttccatcacatttgcatgtaaat
caacatgacatctcaatcttcagcgaagatgcctcagagttagcaagatttggatctatg
catggagctattcaaatgtctgttcaaattgaggaacaaagaaggaactcttatcttagt
gctgaaccattgaacaaggatgtggtatggaagtctccattggattcaaaattcaacccc
cttgatcagcacgattgggaagagagaattctctgggacaattccccagttatcagtgac
aattctgtggagagttgtgatcagtctggatctgaattgggatcttcatttgttatagaa
actgaacaagtgactagtccaccaaatcttcattcagagcacccagtggagttaaacgag
aaccttgataactgtttttggaacaggtcttatgttctcttggagtcctttggctcagga
gattattcagaacctggaaatcttccattattagaaagcagatgccatccacaacttttg
agattggaatctcgcctggaagaggatagctctaatcatgttaatgatagaagagagaat
aacgctgtggagcttcacaaaagtgatgctctaaggcgttttagcaagctcacattgcaa
aatagagacttgatggaaggatcttggttagatgatataatatgggaaccatgtgaagct
aacataaagcctaagctgattcttgatcttcaagatgagcagatgctctttgaaattttg
gatcacagggatagtaagcatcttcaacttcatgcaggggcaatgattataactcgaccc
ctaaagcaaaaggtttctcatgagctactaggctgtggaaatcgatctggttggcaattt
aacattgctaatgacaagttctacatgaacaggaaaaattctcagcgattgcaatcaaat
tctaacaaacgaactgcttatggcattaaaattcatcactctgcacctgcaataaagctt
cagacaatgaagttgaagttgagcaataaagatctagctaattttcatcgaccaaaagct
ttatggtatcctcatgaccatgaggtggctgtcaaagaacgagggaagctacctactgca
ggaccaatgaaaattattttaaagagcttaggaggcaaaggaagtaaggtacatgtggat
gctgaggaaaatatctcatctgtcaaagcaaaagcttcaaagaagctagatttcaagcca
tcagaaactgtgaagttattttatttggggaaggagcttgaagaccataaatctctttct
gctcataatgttcagccaaactccttgcttcatctagttcgaacaaaaattcacttgtgg
cctagggcacaaaagattccgggtgagaacaagtctctgcgccctccaggggcatttaag
aagaaatccgacctttctgtgaaagatggtcatgtttttctaatggagtattgtgaggaa
agacctttgtcattaagcaatgctggtatgggtgccaatctccgcacttactatcagaag
ttgagccccagtgatcaaactggtatcttattgcgcaatgaaaaaagcagcttggggaac
gttgtgatactagagcagactgacaaatcccctttccttggagacataaaagctggttgc
agacaatcatctcttgaaacaaacatgtataaagcgccattatttccccacaaggtgcct
cctactgactatttgttggttcgttctgcgaaaggaaagctttctattagacgcattgac
agagttgctgtcgttggacaacaggagccccttatggaggtattaactcctgcttctaag
aatcttcaggcatatatcttaaataggcaattactgtatctttatcgtgagttccgagct
gccgagaagcgtgggatgcttccttggatccgcgcagatgagctgtccgctcattttcca
aacatttcggagaccatcttgcggaagaagctcaaggagtgcacaattttgcggaagaat
gcaaatggacacttgttttgggcaaagaagcgtgattttatcattccatctgaagaggaa
ttgaaaaagatggtcttaccagagaatgtttgtgcctatgaaagcatgcaagctggtctg
tatcgtcttaaacacttggggattacatggctaacacttcccactagtgtttcgactgca
atgagtcagctccctgacgaagcaatagctttggctgcagcgtcacacatcgagagagaa
cttcagataactccatggagcctgagcagcaattttgttgcttgtacaaaccaggataga
gaaaatattgagcgccttgaaattactggtgttggtgatccatctggccggggcctagga
tttagctatgttcgtactgctcccaaggcaccaatttcaaatgcagtagtgaagaaaaaa
gcaggtgctggtcgaggaggttccactgttactgggacagatgctgaccttcgtagattg
agcatggaggctgcaagagaggtacttctgaagttcaatgtacctgatgagcagattgca
aaacagacaaggtggcatcgtattgccatgatacgcaagctatcaagtgaacaagcttca
tgtggggtaaaggttgatccaacaactatcagcaaatatgcacgtggccaacgaatgtcc
tttcttcagctacatcaacagacaagagaaaagtgccaagaaatttgggatcgtcaagtt
caatctctttcagcattggatggcgatgaaattgaaagtgattctgaagcaaatagcgat
ctggattcctttgctggagacctagaaaacttacttgatgcagaagaatttgaaggagac
gagaataattacgagtccaagcatgacaaaggagatggtgttaaggggataaaaatgaga
agacgcccatcgcaagctcaggcagaagaggaatttgaagatgaagctgctgaggcagct
gaactgtgcaggttgcttatggatgatgatgaggctgagcagaaaaggaagaaaaaaaca
agaaatgttggtgttgatgcagtagtgacacctacgaaaccaaattttgttgacaatgtt
cactggggtaagaaaatgaacaaaacccaacccaatggatcatatgcactaaaacagaac
aacattagagacttgaaggagcttgaaaccttatctatcaaggggaagatgtctgagaag
gtgaaaacagtgaaaaagaatggtgccttcaacacacctccactgaaggcaaaagtaata
atggcagatggacttaatcatattttcaaggagaagaaatcagcaagagagagatttgtt
tgcggagcctgtggacagcttggacacatgaagaccaataaaaactgccctaagtacgga
aaggagcctgaaacaccatcagaaactatagatttggaaaagtcttctagaaaatccact
tcccaggatctcttgaatgtgtcccagcataagttgcagaagaagaagatgatctccaaa
aactcaaccaaaattgaagctgctgagggtgaaaaatctagtttagcaaaatctcttcca
gtgaagttcaagtgtggttccacagagaaattttctgataaaccttctgatggggctgcg
gatacttctaatcaacctaccacgtccaatgtccgacctgtcagctctgatattgacact
gggagtagggcaacttctaaggttagtaaaataaaaattttcaacaaggtgaaacctgaa
aacgtacaggttgaatcacataagccatctattgtgatacgacccccaatggataccgag
agaggccaaagtgaatcacataagccctctattgtgatacgaccaccaacatacatggac
agagaccatgttgatcctcataagccctccattgtgatacgtccaccagcagaaaaagat
agaaaaaagactcaaaagaaaattgttatcaaacagcccaaagagattattgatctggac
caggttagtcaggatggaagccctggttatgagcatcgaaaaactaaaaaaatagttgaa
ctgtccagttttgagaagcctgggaaaaccatgcgtttctctggagagtcggctaagagg
aaagctagggaggacagaagatggtgggaagaggaggagaagcagagagctgccgagaga
cagagagaagatagagcaaggaggatttttgcagaagaaatgaggtcacgtgaagaacga
gaagaacgagaaaaattagctgagattgaaagatacacagaaaccatcagatgggattgg
gaggaggaagaacgccaaaaagccaaaaagaagacgaagaagaagaagaaaaagcccgaa
atcagtgatcacttggatgatttcagggcagacagaaatgagagaaggatgccagaaaga
gatcggggtgcaaaaaggcgacctgttgttgatgtggggaattatggtgctgattatacc
ccggcaaccaagcgtcgtagagttggagaggttggattggcaaacatcttggaaggtatt
gtggatgctcttaaagataggttggaagtgtcctatcttttcttgaaaccggtcctgaag
aaggaggctcctgactacttgcacatcataaaacgccccatggatctttcaactattaag
gacaaggcgaggaagatggaatacaagaaccgaaacgagttcagacatgatatgtggcag
attgcttacaatgctcacttgtacaacgatggacggaaccctggtattcctccccttgca
gaccagcttctggaaatatgtgatttcttgttgatggagaaacaggatagcttatctgaa
gctgaagctggtatttga
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integrated database retrieval system
