KEGG   Populus trichocarpa (black cottonwood): 7487012
Entry
7487012           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5C
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7487012
  09124 Replication and repair
   03420 Nucleotide excision repair
    7487012
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7487012
   03400 DNA repair and recombination proteins [BR:pop03400]
    7487012
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     7487012
  RNA polymerase III system
   RNA polymerase III
     7487012
  RNA polymerase I system
   RNA polymerase I
     7487012
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      7487012
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Period_C
Other DBs
NCBI-GeneID: 7487012
NCBI-ProteinID: XP_002297750
UniProt: B9GM22
LinkDB
Position
1:complement(1917665..1920169)
AA seq 233 aa
MAATTETFNGNGASFHGVLDRDRCLTDFVDEGSAQSYRYYISRRTVLEMLKDRGYDVLDS
ELNRSLTEFRSVFGNSPDLDSLRFSVSLRSNPHKKTLVMFLGTDEIKTANIRTVYGQILN
KESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITDLLVNITKHVLQPQMDILTAEQKQ
QVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKITYSGEIVDHLVTYRCVT
NT seq 702 nt   +upstreamnt  +downstreamnt
atggcagcaaccacagagacctttaacggcaacggcgcttccttccacggcgttctcgac
cgcgatcgatgcctgacggattttgtggacgaagggtcagcacagagctacagatactac
atttctcgaaggacagttttggaaatgctcaaagaccgtggttatgacgtgcttgactca
gaactcaatcgctcgctcactgagttccgttccgtttttggaaatagccctgaccttgat
agcctccgcttctctgtttctctccgctccaatccgcataagaagaccctggtgatgttc
ttgggaactgatgaaattaaaacagcaaatatcaggactgtttatggtcagattcttaac
aaagagagtctacatgggctcatactcatcttgcaaagcaaaatgaaccactttgccaag
aaagagctggagaagtttccattcaaagtggaggtttttcaaatcactgacctgctggtg
aacatcaccaagcatgttctgcagccacagatggatatactgaccgctgagcagaagcaa
caggttatgaacaaatacaagttggaagacaaacagctcccaagaatgctagaatctgat
gctattgtgcaatactatggactgcagaaggggcagatggtgaaaattacatacagcggt
gaaattgttgatcacctggtaacttaccgctgtgttacttaa

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