Populus trichocarpa (black cottonwood): 7489405
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Entry
7489405 CDS
T01077
Name
(RefSeq) solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isoform X1
KO
K14066
geranyl diphosphate synthase [EC:
2.5.1.1
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00900
Terpenoid backbone biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
7489405
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pop01006
]
7489405
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
7489405
Prenyltransferases [BR:
pop01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
7489405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Ta1207
Motif
Other DBs
NCBI-GeneID:
7489405
NCBI-ProteinID:
XP_024467019
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All DBs
Position
10:15291209..15301986
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AA seq
420 aa
AA seq
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MSLSRISRITRNGSRWFLSHQPSSYGFLLSNNSHSSTPKVFSCRETYSWTVPSLHVFKHQ
IHHQSSSLVEEQLDPFSLVADELSVLANRLRSMVIAEVPKLASAAEYFFKMGVEGKRFRP
TVLLLMATALNVRILETTTSGVETTTRGVGDALTTELRKRQQSVAEITEMIHVASLLHDD
VLDDADTRRGIGSLNFVMGNKVAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG
ETMQMTSTSEQRCSMEYYMQKTYYKTASLISNSCKAIALLAGQTTEVAMLAFEYGKNLGL
AYQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMDEFPQLRSVIDWGFDKPENID
VALEYLGKSRGIQRTRELAAKHANLAAAAIDSLPETDDEEVRKSRRALVDLTQRVITRNK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgtctcgaatttcgaggatcaccagaaatggcagccgttggtttctctctcat
caaccctcatcgtatggattcttgctctccaacaattctcactcttctactccaaaggtt
tttagttgcagagaaacttattcatggactgtaccttccttgcatgttttcaaacatcaa
attcatcaccagagcagttccttagtggaggaacaacttgacccgttttcacttgttgct
gatgagctatcagttcttgctaatagattgcggtcaatggtaattgctgaggtacctaag
cttgcctcagccgctgagtactttttcaaaatgggagtagaaggaaagaggttccgtccc
acggttttgttgctgatggcaacagctttgaatgtgcgtatactcgaaacaacaactagt
ggtgtagaaacaacaactaggggtgtaggagatgctttgacaacagaactacgaaaaaga
cagcaatctgtagctgaaattaccgagatgatccatgtggcgagtcttctgcatgatgat
gtgttggatgatgcagatacgagacgtggtattggttcgttaaattttgttatgggcaat
aaggtggcagtactagctggagattttctactttcacgagcttgtgtagcccttgcttct
ttgaaaaacacagaagttgttacattactagcgacagttgtagagcatcttgttactggt
gaaactatgcagatgacttcaacatctgagcaacgttgtagcatggagtattatatgcaa
aagacgtactacaagacggcatctttgatttcaaatagctgcaaggcaattgcccttctt
gcagggcaaacaacagaagttgcaatgttggcttttgagtacggcaaaaatctgggattg
gcatatcaattgattgatgatgttctcgatttcacaggcacttctgcttcccttggaaag
ggttcattatctgacattcgccatggaattgtaacagctccaatattatttgctatggat
gagttccctcagttgcgttcagttattgactggggctttgacaagcctgaaaacattgat
gtagcccttgagtaccttgggaagagccgtggaatacagagaacaagggagctagctgca
aagcatgcgaacctggctgcagcagcaattgattctttacctgaaactgatgatgaagaa
gtaagaaaatcacggagggcactagttgatcttactcaaagagtaatcacaagaaataaa
tga
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