KEGG   Populus trichocarpa (black cottonwood): 7490920
Entry
7490920           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X2
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7490920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7490920
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     7490920
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     7490920
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 CAMSAP_CH
Other DBs
NCBI-GeneID: 7490920
NCBI-ProteinID: XP_024444076
LinkDB
Position
1:8964843..8979581
AA seq 1352 aa
MKFKVSSKEIFRKTAIIAEIRETLSKKPQKGFKKILAADYWDIFPKDEQEEEEETNAKPN
RRVLSHSQVRHMLKDVDPNFIKLSILKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIF
DERTRAYKKMVDFRGVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASG
LRWIKDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACF
EKSRFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALS
VKVLPVPSVLAINPLCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQSGR
NLLSLSQDSLTAAHLVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANALVWTGKQLI
SMLLPVGFDHDFPSCNVCIRDGDLVSSEGSFWLWDTDGNLFQSLVKHCHGQVLDFLYAAQ
RVLCEWLSMRGLSVSLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHLMVDSCRDFL
TGNNEEDQCNVERLRFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVDAFRLVFRDI
QSLVYKYASQDNSFLAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQLSCAGWNK
QKADDATESAKRYIPHAVVEGSFLSGLNPIECFVHSVTSRDSSFSDNADLPGTLFRRMMF
FMRDLHGAYDGTVRNAYGNQLVQFSYNIDDMDPSGSVDEINNSDGIAGRPVGPLAACAIS
EAAYSALDQPISLLEKSPLLNLKNVLECGLKRNSAHQTMSLFLSEKLGRQRHGFEYAALE
VQNHLERLLFSDIVSFVRIIFSPQSDGRMHFSPWVCHFHVYKEIVKKRSLKVHYIIDALE
KQCKSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFL
LETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLS
IMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSV
TGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGK
VPAIGTGQFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGVLDAQIYKSDKCGAQF
LHKFGGCGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDKSVL
MMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEII
APQRAKRYCEKYLTSKVSATDNSGCTDLPLDN
NT seq 4059 nt   +upstreamnt  +downstreamnt
atgaaattcaaagtctcctccaaagaaattttcagaaaaacagcaattatagcagagatc
agggaaacattgtcaaaaaaaccccagaaaggattcaagaaaattctggctgctgactat
tgggatatttttccaaaagatgaacaagaagaagaggaagaaaccaatgcaaaaccaaac
agaagagttctatcacattcacaggttcgacatatgttgaaagatgttgatccaaatttc
ataaaactgtctattttgaagacagatacaattttcctcaattgtttcccagtaacacca
aattctcatcgtgtgacagaagttacacatgcattttctaatgggcagcgattgatcttt
gatgaacggactagggcttacaaaaaaatggttgatttccgaggggtagcaaatacgttg
agttttcacgtcatggactgtctgaaaacttctaaactaaacccagacaagtcaggaaat
attgatccttggactgctcaacctaagaaaagcaacgattatgttaacaacgcatctggt
ttgagatggatcaaggatgtcgttctaggtaaacggaatgatcattcattccgtatggtg
attgtaggggatcctcatctccagctgcacgaaattggcataccttgtcatattgctgag
aggttgcaaatttcagaatctctcacagcttggaattgggagaagttgaatgcttgtttt
gagaaaagccgttttgagaagggtgacatgcatgttcgcagagaagggaatctggttcgt
gttcgtcacatgaaagaacttcgtcttggcgacatcatttatagacctcttaatgatgga
gatacggtcttgatcaataggcccccatccatacatcaacactccctcattgctctctct
gttaaagtccttccagtgccttcggttcttgcaattaatcccctctgttgtcccccattc
cgtgctgatttcgatggtgattgtctgcacggctatgttcctcaatcggtcgacaccaga
gttgagctaactgagcttgtttccttggataagcagttaactaattggcagagtggcagg
aatcttctttctcttagtcaagatagtttaactgctgctcacttggttttggaggatgat
gttttcttaagttcttttgagttgcagcaactgcaaatgtttcgacctgagcggttcctg
ttgccagcagttaaagctccttcagctaatgctcttgtttggactggaaagcagttgatc
agcatgctcctacctgtaggatttgatcatgattttccatcatgcaatgtttgcattcga
gatggtgatcttgtttcttctgaagggtccttttggctttgggacactgatggtaaccta
ttccaaagccttgtgaaacattgccatggtcaggttcttgatttcttgtatgcagctcag
agagttctttgtgaatggttatcaatgaggggcttgagtgtttctctttctgatctgtac
ctctgtcctgattctaactcacggaaaaacatgatggatgaaatttggtatggattgcaa
gatgctgactatgcatgcaacttgaaacatttgatggtagattcctgtcgggatttcctc
actggaaataatgaagaggatcagtgcaatgttgaacgattgcgtttcctttctggatgc
agtgaagaggattattgtgttatggcctttgatggagagcgcttgtgttatgagaaacaa
agatctgctgctctcagtcaatcttctgttgatgctttcaggctagtgtttcgggatatt
caaagtttagtatacaaatatgctagtcaggacaactcatttctggctatgtttaaggca
ggaagcaagggtaatctactgaaattagtgcagcatagcatgtgtctaggcttgcaacat
gcactggcttcattgtccttcagaatacctcatcaactctcatgtgctggttggaataag
caaaaggctgatgatgctactgaatctgccaagcgctacatcccacatgctgttgttgaa
ggttcttttctatctggcttgaatcctattgagtgttttgttcattcagtaacaagccga
gatagctctttcagtgacaatgctgatcttcctgggactttgtttcgaaggatgatgttc
ttcatgcgtgatttgcatggtgcatatgatggaacagttagaaatgcatacggaaatcag
cttgttcaattctcttacaatattgatgacatggatccatctggtagtgttgatgagatc
aataacagtgatgggatagctggtcggccagtgggtccattggctgcatgtgccatctct
gaagctgcatacagtgccctggatcaaccaatcagcctacttgaaaaatcacctctgctg
aatctgaagaatgtattggagtgtggtctgaaaaggaatagtgctcaccaaactatgtca
ctatttttgtctgagaaacttgggagacagaggcatggtttcgagtatgcagcattagaa
gtccagaaccatttagagagactactcttttcagacattgtttcttttgtcaggataatc
ttttcccctcaaagtgatggcaggatgcattttagtccttgggtttgccattttcatgta
tacaaggaaattgtaaagaagagaagtctaaaggtgcactacataattgacgcccttgaa
aagcagtgtaaatcaaaaactcgttttcctaaagtgcaaataacaagcaggtactgcact
gtagctgacacttggaaggaaaaaaaagaaacattttgcataactgtcaccatagttgaa
acttccaagaatgaattcatagaattggagacaattcaagatctaatgattccattcctt
cttgaaacagttataaaaggattcatggagatacaaaaggttgacattttgtggaatgat
aagcccaagataccaaaatctcataatcgtctccgtggtgagctcttcttgagggttcac
atgtcaagaggatctgacaaaacaagactctggaaccaacttatggatgactgtctctca
ataatggatcttattgactgggctcgtagtcatccagataacatacatgaatgctgtttg
gcttatggcatagatgctggatggaaattttttctcaataatttgcagtctgcaatgtct
gatgttggcaagacagtacttcctgaacatttgcttcttgttgcaaattgtctctcagtt
actggggagtttgttggcctaaatgcaaaaggcttgaaacgacaaagagagcatgcttct
gtctcaacgccttttgtgcaagcatgcttttctaatcctggtgattgctttatcagggct
gctaaggctggagtggtggatgatctccagggaagcatagatgctttggcatggggaaag
gttcctgccattgggactggacaatttgatattgtatactctggaaagggtttagagttt
tcaaagcctgttgatgtgtataaccttctgggaagccaaatgatatctactgagcagaat
actgagtttggagtactggatgctcaaatctataaatctgataaatgtggagctcagttt
ctgcacaagtttggtggttgtggccctaaaggatttaaagtaaaggagggtataccaaga
tcattcttacgacgtcttcttacatatgatgacattcaacggatgtcctatacagtgaga
aaaatcttgaataagtactctgtagaccaacaattaaatgagagtgacaagtctgttttg
atgatgactttatatttccatcctcgaagagatgagaagattggaattggagccaaagac
atcaaggttataaaccacccagaatatcaagatacacgctgcttttcactggttagaaca
gatgggacgatagaggacttctcatatcgcaaatgtctccataacgctcttgagatcatt
gctcctcaaagggccaaaaggtattgtgaaaaatatttgacatctaaggtctctgcaaca
gacaacagtgggtgtactgacttgcctttggataactaa

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