Populus trichocarpa (black cottonwood): 7496941
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Entry
7496941 CDS
T01077
Name
(RefSeq) cyclin-dependent kinase D-2
KO
K02202
cyclin-dependent kinase 7 [EC:
2.7.11.22
2.7.11.23
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03022
Basal transcription factors
pop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
7496941
09124 Replication and repair
03420 Nucleotide excision repair
7496941
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pop01001
]
7496941
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7496941
03019 Messenger RNA biogenesis [BR:
pop03019
]
7496941
03400 DNA repair and recombination proteins [BR:
pop03400
]
7496941
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.22 cyclin-dependent kinase
7496941
2.7.11.23 [RNA-polymerase]-subunit kinase
7496941
Protein kinases [BR:
pop01001
]
Serine/threonine kinases: CMGC group
CDK family
7496941
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
7496941
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
7496941
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
7496941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Haspin_kinase
Seadorna_VP7
DUF3874
RTC
Motif
Other DBs
NCBI-GeneID:
7496941
NCBI-ProteinID:
XP_024440116
LinkDB
All DBs
Position
14:complement(5113695..5120044)
Genome browser
AA seq
416 aa
AA seq
DB search
MSENDGEKKVADRYLKREILGEGTYGVVYKAIDTKTGKTVAIKKIRLGRQKEGVNFTALR
EIKLLKELKDPNIIELIHAFPHKGNLHLVFEFMETDLEAVIRDPNIFLSPGDIKSYFQMT
LKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPGRKFTHQVFARWYRAP
ELLFGAKQYGASVDVWAAGCIFAELLNRRPFLQGDSDIDQLGKIFQKLGTPTPLQWPDLE
WLPDFVEYSSQIIQPWRKLCPTASDDALDLLSKMFTYDPRARISVQQALEHRYFTSIPLP
TDPAKLPRPAPKRESHNPRTSDVHDGPVVLSPKRKARRVMSDREGFAGNSFQVDKVDECG
GEIRQAAGDNTGRNEPVLMSVDFSVFGSKPMSRPTINSADRSHLKRKLDLEFQHPE
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaatgatggggagaagaaagtagcggatagatatctaaagcgagagattctt
ggtgaaggtacatatggtgttgtctacaaagccattgatactaagactgggaagactgtt
gcaatcaagaaaattcggctcggaagacaaaaggaaggagtgaattttacagcacttaga
gagattaaacttcttaaagagcttaaagacccgaatataatcgagttgatccatgccttc
cctcacaaagggaacttgcatcttgtgtttgagttcatggagactgatcttgaagcggtg
attcgcgatcccaatatatttctttcgccaggggatataaaatcatactttcagatgacg
ttgaaaggactagctgtttgccataagaaatgggttttgcatagggatatgaagccaaat
aacttgttgataggatctaatgggcagctcaagcttgcagattttggtttagcacgtatt
tttggaagtcctggtcgcaagttcacacaccaagtctttgctcgatggtatagagcacct
gaacttttgtttggtgccaaacaatatggtgctagtgttgatgtatgggctgcaggttgt
atatttgcagagctactgaatcgcagaccattcctacagggggatagcgatatcgatcaa
ctaggaaagatctttcagaagttggggactccaactcctttgcagtggcctgatttggaa
tggcttcctgattttgtagaatattcatctcagattatacaaccttggcgaaaactgtgt
ccaacggctagtgacgatgctttagatctgttatctaagatgtttacatatgatccaaga
gctagaatttcagtgcaacaggcattggaacacaggtatttcacctccatacctctgccc
acagatccagctaagctccctagaccagctcccaagagagaatcacacaatcctaggact
tcagatgtacatgatggtcctgttgtcttgtcaccaaaaaggaaggcaagaagagtgatg
tcagatcgtgaagggtttgctggaaattcattccaagttgataaggttgatgaatgtggc
ggtgagattagacaggcagctggggataacacgggcaggaatgaaccggtgctgatgtca
gtagatttttctgtctttggatcaaaaccaatgagcagacctacgattaacagtgctgac
agatctcatctaaagaggaaactggatcttgagttccagcatcctgaataa
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