Paralichthys olivaceus (Japanese flounder): 109625289
Help
Entry
109625289 CDS
T06037
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109625289 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pov03019
]
109625289 (clp1)
Enzymes [BR:
pov01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109625289 (clp1)
Messenger RNA biogenesis [BR:
pov03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109625289 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
TniB
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
109625289
NCBI-ProteinID:
XP_019936078
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MATEGAEVTSEDAPTPGKVSTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSEL
NRSKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADIEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKDIVESPVCGFIVVTNVDTQTQVMKVLSP
APRPLARHTLLIMDIRFMDTK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgcggaagtcacgagtgaagatgctccaacgcctgggaaggtcagc
accaggtttgacctggagaaggaaactgaacttcggttcgaggtggaggcaggagaggca
gcagagcaagttgagctggagctcctcacgggaatggctgaggtgtttggttcagagctg
aaccgcagcaagaagtacacatttggacctggatctaagattgcagttttcacctggcaa
ggctgcagtgtcaacctttatggcaaaccagaggtggcttatgtgtccaaggacactccc
atgctgctctacctgaacacacacgctgccctggaacagatgaggaaacaagcagagcgg
gacaatgagaggggaccgagggtgatggtggttggacccacagatgtggggaagtcaaca
gtttgccgtctgctgttaagctatgctgtgagagtgggcaggaggccaacactagtggaa
ctggatgttgggcagagtggggtgtccgtgcctgggacagtgtccgcactgtgcatcgag
cgtccggcagacatagaggagggtttctcagtccaggctcctttggtttaccactttggc
tcaactaccccagggaccaacatcaaactttacaacaagctgacgtcatgcctggctgag
gtgttttcccagcgctgtgaggtgaacaggaaggccagtgtgggaggctgcatcatcaac
acctgtggctgggtgaagggctctggataccaggctctggtccattgtgcctctgccttt
caggtggatgtggtgctggtgctggatcatgagaggctgtacaatgaactcaaacgagat
ctccctcactttgtccgggtcgtgctcctacctaagtctggtggggtggtggaacgctcc
aaagaatgccgacgtgagactagggatgagaaaatccgtgagtatttctatggcttccgt
ggagtgtccttctaccctttttcctttgaggtgcgtttctcagacgttcgcatctataag
atcggggcgccatccatcccagactcatgcctgccactaggaatgtctcaggatgacacg
cagctcaagctagtgcctgtgacaccagggagagacctcacgtatcatgtgctgagtgtg
agcagtgcagaagacggagaggaaggggcaagaaaggatatagtggagagccctgtgtgt
ggcttcattgtggtgacaaatgtggacacgcaaacacaggtaatgaaagtgctgtcccca
gcacccagaccactggccagacacacgctgcttatcatggacatccgcttcatggacact
aaatga
DBGET
integrated database retrieval system
