Komagataella phaffii: PAS_chr1-4_0324
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Entry
PAS_chr1-4_0324 CDS
T01092
Name
(RefSeq) RNA polymerase I subunit A135
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAS_chr1-4_0324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr1-4_0324
Enzymes [BR:
ppa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PAS_chr1-4_0324
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
PAS_chr1-4_0324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-GeneID:
8197774
NCBI-ProteinID:
XP_002490446
UniProt:
C4QY42
LinkDB
All DBs
Position
1:2007927..2011424
Genome browser
AA seq
1165 aa
AA seq
DB search
MKASFKTLERENRFKNPPTDKSAFPLLEQAVAPHIGSFNALTDGLNGGLLNLAVKDIGAK
TIFDSNDPSRLGNKLKIRVDAVQLAKPSVAVGDKLSVNRKTLPSECRERMITYKSRFMLK
VCWSVNDGPEETEIREAGQIPVMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEK
LVRMLIVQRRNHPMALIRPSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFR
FSWRKNEYLVPVPMILKALVETNDREIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSK
QETLAYLGDKFRVVFNATPDVSDVDVGKEVLRRIVLVHLPDNRDKFRLLLFMIRKLYALV
SGDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINRGYPVNFDEPKY
MSRVFQRINENIGKKLQYFLSTGNLVSQTGLDLQQVSGYTVVAEKINFYRFISHFRMVHR
GSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKISTEESDVSKVPKVL
SKLGVSANHVFAAGPQMCCVQLDGKIVGWCTHEQAKIVADTLRFWKVEGGHGIPLDLEVG
HVPPSSRGQYPGLYLFGGRARMTRPVRYLPLDKEDIIGPFEQAYINIAVTPEEIESNVHS
HVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQTG
QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSSDERGFGYGTMYKVE
VIDLADSRRKGDPITQHFGFGTDEWPESWKQNLDEDGLPAIGTLVNEGDPIVAYYDDTLG
KTKVKTYHSSEPAYIEEVKLISDDLGDSELQMVTIKYRITRQPQIGDKFSSRHGQKGVCS
RKWPQIDMPFTETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNE
DDTPADFFGEQLISAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVRS
TGPVNSLTMQPVKGRKRNGGIRIGEMERDALIGHGTAFLLQDRLLNCSDYTQTSICKGCG
SLLNTQTSVPRIGTKAMIHCRRCSTKINDVTAGTTDDMDLWEDGQGNRYTGGNDTTTVAI
PFVLKYLDSELSAMGIRMRYNVEPS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcatcgttcaagactttggagcgtgagaatcgattcaagaacccgcctacggat
aaatcggctttccctttgttggaacaggctgtagctccacatatcgggtcgttcaatgct
cttactgatgggctcaatggtggattgttgaacttagcagttaaggatatcggagccaaa
accatatttgatagcaacgatccttcaagattaggaaacaaattgaagatacgagtagat
gcagttcagttggctaagccgtctgtggctgttggagataaattgtccgttaacaggaag
acactaccatctgaatgcagagagagaatgatcacatataaatccagattcatgctgaaa
gtatgctggtccgtcaacgatggcccagaagaaacagaaatcagagaggctggtcaaatt
cctgtcatgctaaagtcaaacagatgtcatcttgagaaaatgtcacccaatgaactggtg
aagaacaaagaggaaagtgacgagcttggagggtatttcattgtcaacggtattgaaaaa
ctagtcagaatgttgattgttcaaagaagaaaccatccaatggctcttattagacctagt
tttggaaacagaggcgattcttatacccaatttggtattcaaataagagctgtcagacca
gaccagacttcacagacaaatgttcttcattacttgaaagacggtaacgttaccttcagg
ttcagttggagaaagaatgagtatttggtccccgtccctatgattttgaaggccctagtg
gagaccaatgaccgtgaaatttttgacggtatagtgggctctgaaacttccaattcgttc
ttgactgatcgtttggaattactgttgagaaattataagcattacaagttagtttcgaaa
caggaaactttggcctatcttggagacaagttcagagtcgtctttaacgcaacacctgat
gtatccgatgtcgatgtgggtaaggaagtactgagaagaatcgtccttgtccatctaccc
gacaacagagataaattcagattgttactattcatgattagaaaactttatgcattagtt
tctggagattgctgccccgataatccagatgctacccaacatcaagaagtcttattggga
ggattcctttatggtatgattattaaagaaaaaattgaagaatacctggccagtattcga
ttacaaatccaaacagacattaatagaggctatccagtgaattttgacgaaccgaagtat
atgtctcgtgtttttcaaagaatcaatgagaatattggtaagaaactacagtatttcttg
tctactggtaacctggtttcccaaacgggattggatttgcagcaagtttcgggttataca
gttgtcgcagagaaaatcaacttctatagatttatctctcatttccgaatggttcataga
ggttcattctttgccgaattgaagacaaccacagttagaaaattacttccagaatcttgg
ggatttttgtgtcctgtgcacacaccagatggttctccatgtggtttattgaaccacttg
gctcacaagtgtaaaatatccaccgaagaatcggatgtttcgaaggtgcctaaagttcta
tcaaaactgggcgtatctgccaatcatgtttttgccgctggacctcaaatgtgttgcgtt
cagttagatggtaagatcgtgggatggtgtacacatgaacaggctaagatcgttgctgac
actttgagattttggaaagtggaaggtggtcatggcattcctcttgatttggaagttggt
catgttccaccttcttctagaggtcaatatcctggactatatctctttggaggtcgtgct
aggatgactagaccagtcaggtacctacctttggataaagaggatattattggccctttc
gaacaagcatacattaacatcgctgttactccggaagagattgaatccaatgttcatagt
catgtcgagttttctccaaccaacattttgtcaattcttgcgaatttaacgccattttct
gacttcaaccaatctccaagaaatatgtatcagtgtcagatgggtaagcaaaccatgggt
acacctggtgttgctttggttcatcgaagtgataataagctttatcgtctacaaacagga
caaactcctatagtaaaggctaatctttacgatgactatggaatggacaatttccccaat
ggaacaaacgcggtcgttgctgtcatttcatacactggttacgatatggacgatgcgatg
atcatcaataaatcgtcagatgaacgtggctttggttacggtaccatgtataaagttgaa
gtgattgatttagctgacagcagaaggaaaggtgatccaattactcaacactttggtttt
ggtactgacgagtggcctgaatcctggaaacagaatctcgatgaagacggattaccagct
attgggactctagttaatgagggagatcccatagtggcatactatgatgacacccttggt
aagaccaaggtgaagacttatcatagttcagagcctgcatacattgaagaggttaaactg
ataagcgatgatttgggagactcggaattgcaaatggtcaccattaagtacagaattact
agacaacctcaaatcggtgataaattctcctctagacacggacagaagggtgtctgttcc
cggaaatggcctcagatagatatgccatttactgaaactggaatacaacctgatgtcata
atcaatccgcacgctttcccatctcgtatgaccattggtatgtttgtggaatctctggct
ggaaaagctggagcattacatggaattgctcaggactctactccatggaagttcaatgaa
gatgatacgccggctgatttcttcggtgagcagctaattagtgccggttacaattaccac
ggtaatgagccaatgtattctggtgtcaccggtgaagaattgagggccgatatttacatt
ggagtggtctactaccaacggttgagacatatggttaacgataaattccaggtcagatct
acgggacctgtcaacagcttgacaatgcaaccagtcaagggacgtaagagaaacggaggt
attcgtattggagagatggaacgtgatgctcttattgggcacggtactgcgttcttatta
caagaccgtctgttgaactgttctgactacactcaaacatctatatgtaaaggctgtgga
tcgttattaaacacacaaacatccgttcctcgtataggcacgaaagccatgatccactgc
cgtcgttgttccacgaagatcaatgacgttactgccggaacgaccgatgatatggatctc
tgggaagatggacagggaaaccgatacactggaggcaacgatacaaccactgttgccatt
ccatttgtgcttaaatatttagactcagagctgtctgcgatgggtattcgtatgagatac
aatgtggaacccagttag
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