Komagataella phaffii: PAS_chr3_0742
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Entry
PAS_chr3_0742 CDS
T01092
Name
(RefSeq) Subunit of cleavage factor I (CFI)
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PAS_chr3_0742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr3_0742
Enzymes [BR:
ppa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
PAS_chr3_0742
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PAS_chr3_0742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
Motif
Other DBs
NCBI-GeneID:
8200436
NCBI-ProteinID:
XP_002492970
UniProt:
C4R5F5
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All DBs
Position
3:join(1418394..1418426,1418513..1419931)
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AA seq
483 aa
AA seq
DB search
MSLPGLDQEASEQSNTITLKPNSEWRYEVSNDETIKVKLIDGFAEIFGTEISQNIEYTFR
GPLKSCIFTYRGCKLQFSGDPSSEYVSEETTMPIYFNLHTLLEEQRKYVTAQNLSRKPND
RLKGPRVLIIGSKDCGRTSLARILVSYAQKMDRQPLLVSLNPQESAFTPPGVLTGTPISE
MLNVENINLGETITTGASFYHQKQPIVKYYGSESLEKNEPLYKYEVSRLGVSCLSRLEED
PIVGNSGLVVDTPPLSIKNLNIIENIISDFEINVLVVIGNERLSIDLKKKLTKLNNPPSD
PSKKLNLVKVAKSGGCVEKDDSFIRSRQQRVIKEYFYGFDKIVLSPYTITVAYNEVILFQ
STNTNEFDQSLIPSADSFIPDSSNADRKGRSTMNFFSRFEPSESSLQHCILTMVNPSQLD
LQKYLYTKDDSGLMEDVANSSVLGFAYVIGADDSKERLRILIPQPSKQLPSKVLILTDYR
YNE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctacctggtctggatcaggaagctagcgaacaatcgaacacaattactctaaaa
cctaactcggaatggagatacgaagtttccaacgatgaaacaatcaaggtcaaactgatc
gacggatttgctgaaatatttggtactgaaatttcccagaatattgagtatacgtttcgt
ggacctttgaaatcatgtattttcacgtatagaggctgtaagttacaattctccggagat
ccatcatctgaatacgttagtgaagaaaccacaatgccaatctatttcaatctgcataca
ttgttagaggaacagaggaaatacgtgactgcgcaaaacctgagcagaaaacctaatgat
agactcaaaggtccaagggtgctcattattggaagcaaagactgtggaagaactagcctg
gcaaggatcttagtatcttatgctcagaaaatggatagacagcctttattggtttctctg
aacccacaagagagtgcgtttacacctccaggcgttttaacgggcacccctattagtgaa
atgttgaatgttgagaatatcaacctgggcgaaacaatcacaacaggtgccagcttctac
caccaaaaacagccgatcgttaagtattatggatcggaatccttggaaaagaatgagccc
ctttacaaatatgaagtctctcgattgggtgtcagctgtcttagtaggttagaggaagat
ccaatagttggaaatagtggacttgtggtggatacaccgccattaagcatcaaaaacctc
aacattatagaaaacattatcagcgatttcgaaatcaatgttcttgtcgtcattggtaac
gaaagattgtctatcgatctaaagaaaaagttgaccaagcttaataatccaccttcagat
ccttccaaaaaattgaacttggtaaaggtggcaaagtctggtggttgtgttgaaaaggat
gattcattcatccgcagcagacaacagagagtgattaaagaatatttttacggatttgac
aagattgtgttatctccgtacacgattactgtcgcctataatgaagtgattctattccaa
tctactaatacgaacgagtttgaccagtcgttaatcccttcagcagactcgttcattccc
gattccagtaatgctgaccgtaagggtcgttctacgatgaatttcttctcgagatttgaa
ccttctgagagttctctacaacattgtatactaacaatggtaaatccttctcagctggat
ttacaaaaatatttgtacaccaaggacgatagtggattaatggaagatgtagctaatagc
tccgttctgggatttgcctacgtaatcggtgccgatgactccaaggagaggttgagaata
ctaattcctcagccttcaaaacagcttccatccaaagtactgatcttgacagactacagg
tacaatgaatag
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