Komagataella phaffii: PAS_chr4_0344
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Entry
PAS_chr4_0344 CDS
T01092
Name
(RefSeq) RNA polymerase II third largest subunit B44, part of central core
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
ppa
Komagataella phaffii
Pathway
ppa03020
RNA polymerase
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PAS_chr4_0344
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr4_0344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr4_0344
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr4_0344
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PAS_chr4_0344
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PAS_chr4_0344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
8200785
NCBI-ProteinID:
XP_002493766
UniProt:
C4R7L2
Structure
PDB
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All DBs
Position
4:702204..703118
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AA seq
304 aa
AA seq
DB search
MSKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADE
FISHRLGLIPLVSEDVEEMKYSRDCTCEDYCDECSVVLELSARHEGEEGTTDVYSSSLIK
VSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGIAKEHAKWSPCSAIAFEY
DPHNKLKHTDFWFEVDAKKEWPDSKYATWEEPPKPGEVFDYKAKPNRFYMTVETTGSLKA
NQVFSRGIKTLQEKLANVLFELENSRPANTTAYGGATAYGGQTVYGRETSYGGNTNYGDY
NAPY
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggaacccaaggttaatatcatcaacgcccaagatgatgaagttgagttgatg
cttagcgatgttaatctatcgttggccaactctcttcgtagaacgatgttggccgaagtt
cccacattagctattgacctcgtggaaattaagatgaatacctcggtgttggcagatgag
ttcatatctcacagactaggattgattcctttggtgagcgaagatgtggaagaaatgaaa
tatagcagagattgcacatgtgaagattactgtgacgagtgctctgtggtgttggaacta
agtgccaggcatgaaggagaggaaggtaccaccgatgtctattcttcttctctgatcaaa
gtgtccggtccaggaaacttgaacgttggtgaaccagtccgtagggatgattatgatcag
ggaatcttgctgtgcaagctgcggaaccaccaggagttgaacattagatgtatagccaaa
aagggtattgccaaagaacatgctaaatggtcaccatgctctgctatagcattcgaatac
gatccacacaacaaactgaaacatacagacttttggtttgaggtggatgccaaaaaagaa
tggccagattccaagtatgccacctgggaggaaccacccaaacctggtgaagtttttgat
tacaaagccaagccaaatagattctacatgacagtggaaaccacaggttctttgaaagct
aaccaggtgttcagcagggggatcaagacgttgcaggagaagttggctaacgtcctgttt
gagctggaaaactctaggcctgccaatacaacagcctatggaggagcgaccgcttatggg
ggacagacggtatatggaagagaaaccagttacggtggcaacaccaattatggagattac
aatgcaccatactga
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