Pleuronectes platessa (European plaice): 128453314
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Entry
128453314 CDS
T09923
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pplt
Pleuronectes platessa (European plaice)
Pathway
pplt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pplt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128453314 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pplt03400
]
128453314 (msh6)
DNA repair and recombination proteins [BR:
pplt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128453314 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
128453314
NCBI-ProteinID:
XP_053292110
EnsemblRapid:
ENSOESG00000021540
LinkDB
All DBs
Position
12:12317712..12326024
Genome browser
AA seq
1392 aa
AA seq
DB search
MAKQSSLFSFFAKSPPPASKPKPKPSPSPTEADLPSSVKKSSSSPKEQAGQQQQQQQQQQ
QQQQQQQQAKSHRVKPKSESRAVKGGFKKLFGDKAAADKESSSTCTFSAGALVWAKLEGH
PWWPCMVVPQPLTGQQMRGRGRAQRIHVHFFDEPPTRGWVSTKYIRAYQGSDSSDAKTGG
VFFSCKPEIQHAMELADGVMFDSPEKRIQMPLCTDPSDDEDEYEEEMEVDKSTLSDEELS
DEDDQEHEEEKSSKVGRRSSRASTEKSNKAKRRRIIVASDSDDSGEEFKPEKAVSSSEDE
VEEGTVSSEEEEEESMDESVVESPIKPAKRKRPEEKSAGAKPKVATTPSAAPKRAPAAVA
ADTKSRLSAFSAPDSFDSQANGSGGGGAATVWDHDNLEWLQEGRRKDKQRRRDSEEDYDP
TTLYVPEDFLNRTSPGMRRWWQIKSEMFDTVIFYKVGKFYELYHVDAVIGVNELGLTFMK
GNWAHSGFPEIGFGRFSDVLVQNGYKVARVEQTETPDMMETRCKTMFKPTKFDRVVRREV
CRIITRGTQTYSVLDGAPSESQSKFLLSVKEKAEEDSSGQCRTYGVCFVDTSVGYFHVGQ
FPDDRHCSRLRTLIAHFAPVEVLFERGNPSAETRKILKASLSSALQEGLNAGTQFWDAQK
TLKTLSEEDYFKDTTGKEEKAGNHFLPPLLKKMTSESDSLGLTPKEGYELALSALGGCVF
YLKKCLVDMELLSMANFEEYVPVDVELEKAAGPASFFAQTRQRMVLDGVTLANLEIFQNG
SGGTEGTLLERLDTCATPFGKRLLKQWLCAPLCNPKSVKDRLDAVEDLMGAQAQATEVSD
LLKKLPDLERLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKITDFLSALEGFKTMQE
IISILALMKGEFRSSLLRQIVSLKGENDGLFPDLSAELRRWETAFDHQKARTTGIISPKL
GFDPEYDQSLTGVKNCERELLDYLDRQKKRLGCKNMSYWGTGRNRFQMEVPDSFSDRNIP
EEYEVKSTKKGWKRYVTKETEEMFSELQGFEEKRDAALKDCMRRLFFNFDKDYRDWKTGV
ECMAVLDVLLALSRYSQDGDGPMTRPQLVLPEGNNQVAPFVDIVGSRHPCVTKTFFGDDF
IPNDIFIGSDDTDEERSPALCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFT
PVDRVFTRLGASDNIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIA
SAVVNELAEKICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENECEDPSQETITFLYK
FIGGACPKSYGFNAARLANLPEEVIQSGHRKAREFEKGTLSLRLFKKLCQFAEDATKGGT
HFNSLVQMLNSM
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctctgttcagcttcttcgccaagtctccgccgccggcctccaag
cccaagccgaagcccagtccctctccgaccgaggcggacctgccctcctcggtgaagaag
tccagctcgtccccgaaagagcaagcgggacaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaagccaagagccaccgagtgaaacccaagagtgagtcc
agggctgtgaaaggtggattcaagaagctgttcggagacaaggccgctgcagataaagaa
agcagctccacatgcacgttcagtgctggtgccctcgtgtgggcgaaattggagggacac
ccttggtggccatgcatggtggtaccccaacctctgactggtcagcagatgagaggccgc
ggccgagcacaacgcattcacgtccatttcttcgatgaacctcccaccagaggatgggtc
agcaccaaatatatcagagcgtatcaaggctctgacagcagtgacgccaaaaccggcggg
gtgttcttcagctgcaagcctgagatccaacatgcgatggaacttgctgacggagtcatg
ttcgacagccctgaaaaaagaatccagatgccgctctgcacagacccatctgatgatgaa
gatgagtatgaagaagagatggaggtcgacaaatcaactctctctgatgaagagctcagc
gatgaggatgaccaggaacacgaggaagagaagtcatccaaagtcggtcgccgttcatcc
cgggcttcgacagaaaagagcaacaaggccaagcggcgtcgcatcattgtcgcctcagac
agtgacgactcgggtgaggaattcaaaccggaaaaggctgtttccagcagtgaggatgaa
gtggaagaaggaacagtgagtagtgaagaggaggaagaggagagcatggatgagtccgtg
gtagaaagccccatcaagcctgcgaagcgcaaacgtcctgaagaaaagtcggctggtgca
aaacccaaagtggcgactaccccatctgctgcgccgaaacgagctccagcagcggtcgcc
gcggacacaaagtcccgcttgtccgccttctcggcccccgacagcttcgacagccaagca
aacggttccggcggcggtggagcagcgacagtctgggaccacgacaacctggaatggttg
caggaaggacggaggaaagacaagcaaaggaggcgagactccgaggaggactacgatccc
accaccctgtacgtgcccgaagactttctgaacagaacctctccgggcatgcgtcggtgg
tggcagatcaaatccgagatgtttgatacggtcatcttctacaaagtgggcaagttttat
gagctctaccacgtggacgccgtgatcggagtcaacgagttgggtctgaccttcatgaag
gggaactgggcgcactcgggttttccggagatcggctttggccgtttctcggacgtgctg
gtccagaacggctacaaggtggctcgggtggagcagacagagaccccggatatgatggaa
actcgctgtaagaccatgttcaagcccacaaagtttgaccgcgttgtgagaagagaggtg
tgccggattatcactcgcggaacccaaacctacagtgtgttggacggcgccccctcggag
agtcagagcaagttcctgctgagtgtcaaggagaaggcagaagaggacagctcgggtcaa
tgtcgcacctatggagtctgctttgtagacacgtctgtgggttactttcacgtgggtcag
ttcccagacgatcgtcactgctcacgcctgcgcaccctgatagcccactttgcaccagtt
gaggtgctcttcgaaagggggaacccgtccgctgaaacacgcaaaatactgaaggcctct
ctgtcctctgctctgcaggaagggcttaacgcaggaacacagttctgggatgcacagaag
actcttaaaactctatcagaagaagactacttcaaagataccaccggcaaggaggagaag
gctggaaaccatttcctgcctcctcttttgaaaaagatgacctctgagagtgattcactg
ggcctgactcctaaagagggctacgagctggctctgtctgcactgggtggatgcgttttc
tacctgaagaaatgtctggtagatatggagctgctctccatggccaactttgaagaatac
gtgcctgtcgacgttgagctggagaaagctgccggacccgccagtttctttgcccagact
cgtcagcgaatggtcctcgatggggtgacgctggcaaacttggaaatctttcagaatggg
tcaggaggaaccgaggggacgctactggaacgtttggacacatgcgctaccccgtttggc
aagaggctgctgaagcagtggctctgtgctccgctgtgtaaccccaaatccgtgaaggac
agactggatgccgttgaggacctgatgggagctcaggcccaggctactgaggtctcagac
ctgctgaagaaactcccagacctggagcgtctcctgagcaaaatccacagcatcggaact
cctctgaagggccaggaccaccctgacagcagagcggttctctacgaggaggtcacctac
agcaaacgcaagataacagacttcctctctgcactggaaggtttcaaaaccatgcaggaa
atcatttctatccttgctctcatgaagggagaattccgctcctcgctgctccgtcaaatc
gtcagcctgaaaggtgagaacgacggcctcttccccgacctctctgccgaactccggcgc
tgggagacggctttcgaccaccagaaagcccgcaccaccggtatcataagcccaaaactt
ggctttgacccggagtacgaccagtccctgaccggggtcaagaactgtgaacgggagctg
ctggattacctggacagacaaaagaagaggctcggatgtaaaaacatgtcctactgggga
acgggaaggaaccgcttccagatggaggtgcccgacagcttctccgatcggaacattcca
gaagagtatgaggtgaagtccacaaagaaaggctggaagcgctacgtgacaaaggagact
gaggagatgttttcagagctgcaaggattcgaggagaagagagacgctgccttgaaagac
tgcatgaggaggctcttcttcaactttgacaaagactacagagattggaagactggtgtt
gagtgcatggcagtgcttgatgttctgctggccctgtcacgctacagtcaggatggagac
ggaccgatgaccaggccgcagctggttctccctgagggtaacaaccaggtggcgcccttt
gtggacatcgtcggatcccgccacccgtgtgtcaccaagaccttctttggtgacgacttc
attccaaatgacatctttatcggcagcgacgacacagacgaggagagaagccccgcgctg
tgtgtcctggtcacgggaccaaacatgggtggaaagtccactctcatgagacagtgtggg
cttgtgatcatcctggctcagctgggctgctacgtccctgctgagagcctgcgcttcaca
cccgtcgacagagtcttcaccagactgggagcctctgataacattatggctggagagagc
accttctttgtggagttaagtgagactgccagcatcctgcaccatgccaccaagcattcc
ctcgtgctcctggatgaattaggaaggggcacagccacatatgatggcacagcgattgcc
agtgctgtcgtgaatgaactcgctgagaagatctgctgtcgcaccctcttctccacacat
taccactccctggtggaggattacaccaacaaccctgctgtgcggttgggccacatggcg
tgcatggtggagaatgaatgtgaggatccaagtcaggaaaccatcacattcctctacaag
ttcatcggcggtgcttgtcccaagagttacggcttcaacgctgctcgacttgcaaacctc
ccagaggaggtcatccagtcaggacacaggaaggccagagagtttgagaagggcaccctg
agcctcagactgttcaagaagctctgccagttcgctgaagatgccactaagggcggcaca
cactttaattcacttgttcagatgctcaacagcatgtag
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