Pandoraea pnomenusa DSM 16536: LV28_03865
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Entry
LV28_03865 CDS
T03411
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ppnm
Pandoraea pnomenusa DSM 16536
Brite
KEGG Orthology (KO) [BR:
ppnm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppnm03009
]
LV28_03865 (rimO)
Enzymes [BR:
ppnm01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LV28_03865 (rimO)
Ribosome biogenesis [BR:
ppnm03009
]
Prokaryotic type
ribosomal protein modification factors
LV28_03865 (rimO)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
AIU25792
UniProt:
A0A378YDW9
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All DBs
Position
2303284..2304651
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AA seq
455 aa
AA seq
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MSRPSPAGTPKVGFVSLGCPKALVDSEQILTQLRAEGYDIAGTYDGADLVVVNTCGFIDD
AVQESLDAIGEALAENGKVIVTGCLGAKKDAAGQDIVSAVHPKVLAVTGPHAVGEVMSAV
HTHLPKPHDPFTDLVPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPVAEV
MLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWAGRPLKTRMTELVTALGELARQYG
AWVRLHYVYPYPHVDEIIPLMAEGHILPYLDVPLQHAHPDVLKRMKRPASGEKNLERIQA
WRKMCPDLTIRSTFIAGFPGETEAEFEYLLDFLREAELDRVGCFAYSPVEGAKANELAGA
LPDEVREERRARFMEVAEEISAQRQQRKVGTTLQVIVDEINQDGGVARSAADAPEIDGLV
YIEPTAKAAKRLKVGEFVNVTVTGADGHDLWGEVV
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcccatcgcccgccggcacccccaaagtcggcttcgtttcgctcggctgcccc
aaggccctggtcgactccgagcagatcctgacgcaattgcgcgccgaaggttacgacatc
gccggtacctatgacggtgccgacctcgttgtggtcaacacctgcggtttcatcgacgac
gccgtccaggaaagcctcgatgcgatcggcgaagcactcgccgaaaacggcaaggtcatc
gtgaccggttgcctgggcgccaagaaagacgccgccggtcaggacatcgtgagcgcggtg
cacccgaaagtgctcgccgtgaccggtccgcacgccgtgggcgaagtcatgagcgcggtg
cacacacacctgcccaagccgcacgatccgttcaccgatctcgtgccgcccgcgggcatc
aagctcacgccgcgtcattacgcgtatctgaagatttccgaaggctgcaaccatcgctgc
acgttctgcatcattccttcgatgcgcggcgatctcgactcgcgcccggtcgcggaggtg
atgctcgaggccgaaaacctgttcaaggcgggagtcaaggagttgctggtgatctcgcag
gacaccagcgcctacggcgtcgatgtgaagtaccgtaccgggttctgggccgggcgtccg
ctcaagactcgcatgaccgaactggttacggcgctgggagagttggccaggcagtacggc
gcgtgggtgcgtctgcactacgtctatccgtacccgcacgtcgacgagatcatcccgctg
atggccgaaggccatatcctgccgtatctcgacgtgccgcttcaacacgcgcatcccgac
gtgctcaagcgcatgaagcgcccggcctcgggcgagaaaaatctcgagcgcatccaggcg
tggcgcaagatgtgtccggacctcacgatccgcagcacgttcatcgccgggttcccgggc
gaaacggaagccgaattcgaatacctgctggacttcctgcgcgaagccgaactcgatcgc
gtgggttgcttcgcctactcgccggtcgagggcgcgaaggcgaacgagctggcgggcgcc
ctgcccgacgaagtgcgcgaggagcgccgcgcgcgcttcatggaggtggccgaggagatt
tcggcgcaacgccagcagcgcaaggtcggcacgaccctccaggtaatcgtcgacgaaatc
aatcaggatggcggcgtggcccgctccgcggcggacgccccggaaatcgacggcctcgtg
tacatcgaacccaccgcgaaggccgcgaagcgcctgaaggtcggcgaattcgtgaacgtg
actgtgaccggcgccgacggtcacgacctgtggggcgaggtcgtctga
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