Pollicipes pollicipes (gooseneck barnacle): 119094897
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Entry
119094897 CDS
T08250
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03020
RNA polymerase
ppoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119094897
09124 Replication and repair
03420 Nucleotide excision repair
119094897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppoi03021
]
119094897
03400 DNA repair and recombination proteins [BR:
ppoi03400
]
119094897
Enzymes [BR:
ppoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119094897
Transcription machinery [BR:
ppoi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119094897
DNA repair and recombination proteins [BR:
ppoi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119094897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
119094897
NCBI-ProteinID:
XP_037073706
EnsemblRapid:
LOC119094897
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MAVPSGDSKAPLREIKRIQFGILSPDELRRMSVTEGGIKYPETMEGGRPKLGGLMDPRQG
VIDRLSRCQTCAGNMTECPGHFGHIDLAKPVFHPGFLTTSIKILRCVCFYCSKLLVTPTN
PKIKEIVLKSKGQPRKRMTHVYDLCKGKNICEGGDELDLQKEGGGDDPGQVKGHGGCGRY
QPRIRRSGLDLTAEWKHVNEDSQEKKINLTAERVYEIFKHISDEECFLLGMDFKFARPDF
MIITVLPVPPLCVRPAVMMFGSAKNQDDLTHKLADIIKANNELIKNEAAGAAAHIILENH
KMLQYHVATLSDNDMPGLPRAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TADPNLRIDQVGVPKSIALNLTYPEIVTPFNIDKMQDLVKRGNNQYPGAKYIIRDNGERI
DLRFHPKPSDLHLQCGYKVERHIIDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
VTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIVTPQSNKPVMGIVQDTLTAVRK
MTKRDVFLEKEEMMNLLMFLPTWDGKIPVPAVLKPRPLWTGKQLFSLIIPGNVNMIRTHS
VHPDDEDHGPYKWISPGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWLELGHEICGH
FYHDIQSVVNAWLLYEGHSIGIGDTISDPETYSDIQNTIRKAKEDVIQVIEKAHNDELEP
TPGNTLRQTFENHVNRILNDARDKTGASAKNSLGEYNNLKAMVVAGSKGSPINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVAQLVQLRYGEDGLAGEFVEFQSLS
TIKLSDAAFRRKFKFETTNERHLRRVFQEDIVRDLMGSGEMIGELEREWESLSRDRQELR
QIFPTGESRVVLPCNLERMIWNGQKIFHIKKTEPTDLSPLKVLEGVRTLLSRCVVVRGED
QLSKTANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGEIDTRFHQAMANPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSKKPKAPSLTVFLTGAS
ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRI
SPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDS
KFADEDEQMDKMEDDMFLRCIEANMLSDMTLQGIESISKVYMHLPSTENKKRIVITETGE
FKHIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVMGIEAVRKCIEKEMNTVLQ
FYGLYVNYRHLALLCEVMTSKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAE
VDPLRGVSEKIMVGQLAGVGTGCFDLLLDAEKCKHGIEIPMTLGAGMGVGMFFGSAATPG
SGMSPVMTPWNQSATPAYASVWSPGMGSGMTPGGPGFSPSSSSDASGLSPGYSPGWSPQP
ASPGGGLSPSYSPSSPGYVPTSPSLGPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPGYSPTSPSYS
PTSPSYSPTSPQYSPQSPSYSPSSPKYSPTSPSYSPSSPKYSPTSPTYSPASPAYSPSSP
KYSPTSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYSPGSPTYSPTSPGYSP
TSPKYSPTSPTYSPTTPGYSPTSPTYSPSSPGYESEEEERNRRR
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgccgtcgggagactcgaaggcgcctctgcgcgagatcaagcggattcagttc
ggcatcctgagcccggacgagctgcgccgcatgtcggtcaccgaaggcggcatcaagtac
ccggagacgatggagggcggccggcccaagctgggcggcctgatggacccgcgccagggc
gtcattgaccggctctcgcgctgccagacgtgcgccggcaacatgacagagtgccccggc
cacttcgggcacatcgacctggccaagcccgtcttccacccgggcttcctcaccaccagc
atcaagatcctgcgctgcgtctgcttctactgctccaagctgctcgtcacaccgaccaac
cccaagatcaaggaaatcgtgctcaagtccaagggccagccgcgcaagcgcatgacgcac
gtgtacgacctgtgcaagggcaagaacatctgcgagggcggcgacgagctggacctgcag
aaggagggcggcggcgacgacccgggccaggtgaagggccacggcggctgcggccggtac
cagccgcgcatccgccgctcgggcctcgacctcaccgccgagtggaagcacgtcaacgag
gactcgcaggagaagaagatcaacctgaccgccgagcgcgtctacgagatcttcaagcac
atctcggacgaggagtgcttcctgctcggtatggacttcaagttcgctcggcccgacttt
atgatcatcacggtgctgccggtgccgccgctctgcgtgcggccggccgtcatgatgttc
ggctcggccaagaaccaggacgacctcacgcacaagctggccgacatcatcaaggccaac
aacgagctgattaagaacgaggcggccggcgccgccgcgcacatcatcctcgagaatcac
aagatgctacagtaccacgtggccacgctgtccgacaacgacatgccgggtctgccgcgc
gccatgcagaagagcggtcgcccgctcaaggccatcaaggcgcgcctcaagggcaaggag
ggtcgcatccgaggcaacctcatgggaaagcgagtagatttctcggcgcgaaccgtcatc
acggccgacccgaacctacgcatcgaccaggtgggcgtgcctaagtcgatcgcgctcaac
ctcacctacccggagatcgtgacgccgttcaatatcgacaagatgcaggacctggtgaag
cgcggcaacaaccagtacccgggcgccaagtacatcatccgcgacaacggcgagcgcatt
gacctgcgcttccacccgaagccatccgacctgcacctgcagtgcggctacaaggtggag
cggcacatcatcgacggcgacctggttatcttcaaccggcagccgacgctgcataagatg
agtatgatgggccaccgcgtcaaggtgcttccctggtcgacgtttcggatgaacctcagt
gtcacatcgccctacaacgccgacttcgacggcgacgagatgaacctgcacgtgccgcag
tcgatggagacgcgcgccgagatcgagaacatgcacgtgacaccgcgcatgatcgtcacg
ccacagtccaacaagcccgtcatgggcatcgtgcaggacacgctgacggccgtgcgcaag
atgaccaagcgcgacgtgttcctggagaaggaggagatgatgaacctgctcatgttcctg
ccgacgtgggacggcaagatcccggtgccggccgtgctcaagccgcgcccgctgtggacc
ggcaagcagctgttctcgctcatcatcccgggcaacgtaaacatgatccgcacgcactcg
gtgcacccggacgacgaagaccacggcccgtacaagtggatctcgcccggcgacaccaag
gtgctcgtcgacaacggcgagctgatcatgggcattctgtgcaagaagtcactgggcgca
tcggccggctcgctgctgcacatctgctggctggagctgggccacgagatctgcggccac
ttctaccacgacatccagtcggtggtgaacgcctggctgctgtacgagggccactcgatc
ggtatcggcgataccatctccgacccggagacctactccgacatccagaacaccatccgc
aaggccaaggaggacgtgatccaggtgatcgagaaggcgcacaacgacgagctggagccc
acgcccggcaacacgctgcgacagacgttcgagaaccacgtcaaccgcatcctcaacgat
gcgcgtgacaaaaccggcgcctccgccaagaactcgctcggcgagtacaacaacctcaag
gccatggtggtggccggctccaagggctcgcccatcaacatctctcaggtcatcgcgtgc
gtgggccagcagaacgtggagggaaagcggatccccttcggcttccgcaagcgcacgctg
ccgcacttcatcaaggacgactacggaccggagtcgcgaggcttcgtcgagaactcgtac
ctggccggcctgacgcccaccgagttctacttccacgccatgggcggccgagagggtctg
atcgacacggccgtgaagacggccgagacgggctacatccagcggcgcctcatcaaggcc
atggagtcggtcatggtcaactacgacggcaccgtgcgcaactctgtggcgcagctggtg
cagctgcgttacggcgaggacggcctggccggcgagttcgtcgagttccagtcgctgtcc
accatcaagctgtcggacgcggcgttccggcgcaagttcaagttcgagacgaccaacgag
cggcacctgcggcgcgtcttccaggaggacatcgtgcgtgacctgatgggctcgggcgag
atgatcggcgagctggagcgcgagtgggagagcctctcgcgagaccggcaggagctgcgc
cagatcttccccaccggcgagagccgcgtcgtgctgccctgcaacctggagcgtatgatc
tggaacggccagaagatcttccacatcaagaagacggagccgaccgacctgagtccgctg
aaggtgctggagggcgtgcgcacgctgctgtcgcgctgcgtggtggtgcgcggcgaggac
cagctctcgaagacggccaacgccaacgccaccatcctgttctcgtgcctagtgcgctcg
acgctgtgcacgcgccgggtggccgaggagtaccggctcagctcggaggcgttcgagtgg
ctgatcggcgagatcgacacccgcttccaccaggccatggccaacccgggcgaaatggtg
ggcgcgctggccgcgcagtcgctcggcgagcccgccacgcagatgacgctcaatacattc
cacttcgccggcgtgtcgtccaagaacgtgacactcggcgtgccgcgcctcaaggagatc
atcaacgtgagcaagaagccgaaggcgccgtcgctgacggtgttcctgacgggcgccagc
gcgcgtgacgccgaaaaggccaagaacgtgctgtgtcggctggagcacaccacgctgcgc
aaggtcacggccaacacggccatctactacgaccccgacccgcagaacacggtcatcgcc
gaggaccaggagttcgtcaacgtctactacgagatgcccgacttcgaccccacccgcatc
tcgccctggctgctgcgcatcgagctggaccgcaagcggatgactgacaagaagctgacc
atggagcagatctctgagaagatcaacgccggctttggcgacgacctgaactgcatcttc
aatgacgacaacgccgagaagctggtgctgcgcatccgcatcatgaactcggacgactcc
aagttcgccgacgaggacgagcagatggacaagatggaggacgacatgttcctccgctgc
atcgaggccaacatgctcagcgacatgactctgcagggcatcgagtccatcagcaaggtg
tacatgcacctgccgtcgacggagaacaagaagcgcatcgtcatcacggagacgggcgag
ttcaagcacatcgccgagtggctgctggagacggacggcacgtcgctgatgaaggtgctg
agcgagcgtgatgtcgaccccgtgcgcaccttctccaacgacatctgtgagatcttctcc
gtcatgggcatcgaggccgtgcgcaagtgtatcgagaaggaaatgaacacggtgctgcag
ttctacggcctctacgtcaactaccgccacctggcgctgctgtgcgaggtcatgacctcc
aagggccacctgatggccatcacgcgacacggcatcaaccggcaggacacgggcgccctc
atgaggtgttcgttcgaggagactgtggacgtgctgatggacgcggcagcccacgccgag
gtcgacccgctccggggtgtctccgagaagatcatggtcggacagctggctggagtgggc
acagggtgcttcgacctgctgctggacgccgagaagtgcaagcatggcatcgagatcccg
atgacgctgggcgccggcatgggcgtcggcatgttcttcggctcggcggccacgcccggc
tcgggcatgtcgccagtgatgacgccctggaaccagagtgcgacgccggcgtacgccagc
gtctggtcgccgggcatgggcagcggcatgacgcccggcgggccgggcttctcgcccagc
agcagcagcgatgcgtccggcctgtcgcccggctactcgcccggctggtctccgcagcca
gccagccccggtggcggactgtcgccgagctacagcccctcgtcgcccggctacgtgccc
acctcgcccagcctgggccccaccagtcccaactacagtccgaccagccccagctacagt
cccaccagccccaactacagtccgaccagccccagctacagtcccaccagccccaactac
agtcccaccagccccagctacagtccaaccagccccagctacagtccgacgagtcccagc
tactcaccgacgagtcccagctattcgcccacttcgccatcctactcacccacgagtccg
tcctacagcccgacaagtccgagttattcgccaaccagtccgagctactcgcccacatcg
ccatcctactcacccacgagtccgtcctacagcccgacaagtccgagttattcgccaacc
agtccgagctactcgccgacaagcccgagctattcgccgacgagcccgagctactcgcct
agctcgcctaactacagtccgtcatcaccaggctacagtccgacgagcccgagctactcg
ccgaccagcccgagctactcgcccacgtcgccgcagtactcgccgcagagtcccagctac
tcgcctagctctcccaagtactcgcctacgagcccaagctattcgcccagctcgcccaag
tacagtccgacgagtcccacgtacagcccggcgtcgccagcgtacagccccagctcgccc
aagtactccccgaccagccccaagtacagccctaccagccctacctactcgcccacctcg
ccgtcctacagccccagctcgcccaagtactcgccgacgagccccaagtactcgccgacc
agccccacatactcgccgggctcgccgacctacagtccgacgagtcccggctacagtccg
accagccccaagtatagccccaccagtcccacctacagtccgacgacgccgggctacagt
ccgaccagccccacctacagccccagcagtccgggctacgagagcgaagaggaagagcgc
aacagacgccgctag
DBGET
integrated database retrieval system
