Pectobacterium polonicum: LW347_14000
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Entry
LW347_14000 CDS
T08488
Symbol
nirB
Name
(GenBank) nitrite reductase large subunit NirB
KO
K00361
nitrite reductase [NAD(P)H] [EC:
1.7.1.4
]
Organism
ppoo
Pectobacterium polonicum
Pathway
ppoo00910
Nitrogen metabolism
ppoo01100
Metabolic pathways
ppoo01120
Microbial metabolism in diverse environments
Module
ppoo_M00531
Assimilatory nitrate reduction, nitrate => ammonia
ppoo_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
ppoo00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
LW347_14000 (nirB)
Enzymes [BR:
ppoo01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
LW347_14000 (nirB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox
Rieske_2
Rubredoxin_C
NIR_SIR
Fer2_BFD
DAO
Pyr_redox_3
NIR_SIR_ferr
GIDA
AlaDh_PNT_C
NAD_binding_8
NAD_binding_9
FAD_binding_3
FAD_binding_2
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
UVO10517
LinkDB
All DBs
Position
complement(3107431..3111618)
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AA seq
1395 aa
AA seq
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MKPHLIVIGNGMASARFVDVLRQLAATRFRITVIGDEPRASYNRILLSPVLSGEKAFTDT
LLTPAAIDDDAALPVSYLLGERVTHIDRQQREVTTTQRQLHYDHLVLATGSTPFMPPMPG
IDLAGVCGFRTLDDVELMLTTIRQSVPAVVIGGGLLGIEAAAALKLRGADVTLLHRVPVL
MERQLDATASDLLCDSLRERGIACETDVQVVALHGDERGVTAVALADGRTIPAGLVVVTA
GVIPASQLARECGLPCNRGVLVDGQLQTADPYISAIGECCELNGETFGLVAPCFAQATLV
AQRLAGHAPQDYQREQATTRLKVTGIGVVSGGDINVAPNDEVYTTFDPQTQHYRRLLLRD
GRLCGVLLYGDTDDSPRLLAAMESTTEGEMIPPAALLFGLSSPDSDPQPEAVRIPVMSKP
ILVVVGHGMVGHYFLEQLVERDLHQHYHIVVFGEERHEAYDRVHLSEYFSGRSAASLSLV
KDGFFAESGIELRSASEIVAIDRERQCVCDAQGKEIAYDKLVLATGSYAFVPPIPGNTRP
GCLVYRTLDDLDAIAAQAKKAKSGVVIGGGLLGLEAANALRQLGLDTHVVEFAPRLMAVQ
LDDGGATMLRRKIEALGVQIHLSKETREITDGEQALHRLCFADGSVLETDLVLFSAGIRP
RDKLADSCDLEKGPRGGIVIDDRCQTSDDAIFAIGECALWKGQIFGLVAPGYQMARSVAD
TLAQRDTPFTGADMSTKLKLLGVEVASIGDAHGRTAGSQSYQWTDGPNEVYKKIVVSADG
KRLLGAVLIGDSSDYSTLLQMMLNDMPLPAQPEGLILPARSGDAPKGLGVAALPASAQIC
SCHNVSKGDISAAVAGGCGELGALKTCTKAGTGCGGCVPLLKQVMEYELTQLGVEVKKDI
CEHFAYSRQELYHLIRVHEIRSFDSLLERYGHGLGCEVCKPLVGSMLASCWNDYLLQPQH
LPLQDTNDRFFANIQKDGTYSVVPRVPAGEITPAGLIAIGQVAQRYNLYTKITGGPRVDL
FGARLEQLPAIWRELIDAGFETGHAYGKSLRTVKSCVGSTWCRYGVQDSTGLAIQLEHRY
KGLRSPHKVKMAVSGCTRECAEAQSKDIGVIATDKGWNLYVCGNGGMKPRHADLFSSDLD
TETLLRTIDRVLMFYIRTGDRLQRTSTWMDNLEGGIDYLRQVILEDSLNIGEELDKEMQR
VVDAYQCEWQTTLESPERLALFRGFLNSDSPDEAVVMVPERGQIRPAQEHEKAISPEPVV
LKPAAHEAEWVQVATLSDIPRHAGMAARLGQQQIALFHLPGSEQQVYALENHEPGSGANV
LSRGLLGDVAGEPVVISPLYKKRFKLRDGVSTDDSALYVRAWPVRVEDDEIWVCRQPLAV
PESVGLADNDMAKAS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgcatctgattgtgattggtaacgggatggcgagtgcgcgattcgtcgatgtg
ctgcgccaactggccgccacgcgcttccgaatcaccgtgattggtgatgaaccgcgcgcc
agctataaccgtatcctgctgtcgccggtattaagcggcgaaaaagcgtttacggatacg
ctgttgacgccagcggctatcgacgacgatgcggcgctgccggtgagttatctgctgggt
gagcgggtaacccatatcgatcgccagcagcgtgaggtgacaacgacgcaacggcaactg
cattacgatcatctggtgttggcgaccggctccacgccgtttatgccgccgatgccgggt
atcgatctggcgggcgtgtgcggcttccgcacgctggatgatgtcgaactgatgctgacg
acgattcgccagtccgtccctgcggtagtgattggcggtggcctgctcggcattgaagcc
gccgcagcgctgaaactgcgtggtgccgacgtcacgttgctgcatcgcgttccggttctg
atggagcgtcaactggatgccacggcgagcgacctgctgtgcgacagcctgcgcgaacgc
ggcattgcctgcgagacggatgtgcaggttgtggcactgcatggcgatgaacgcggggtg
acggcggtcgcactggcagatggccgcacgattccggcgggtctggtggtggtgaccgcg
ggcgtgattcctgccagccaactggcgcgtgaatgcggcttgccctgcaaccgtggcgtg
ctggtggatggacaactgcaaaccgccgacccctatatcagcgcgatcggcgaatgctgt
gaactcaatggcgaaacctttgggctggttgccccgtgtttcgcgcaggctacgctggtg
gcacagcgccttgctggacatgcaccgcaagactatcagcgtgaacaggcgacgacgcga
ctgaaggtcacagggattggcgtagtcagcggcggcgatattaacgtggcaccgaatgat
gaggtgtacaccacttttgatccgcagacgcagcactatcgtcgtctgctcctgcgcgac
ggtcggctgtgcggtgtcttgctgtatggcgacactgacgacagcccgcgtctgctggcc
gcgatggagagcaccactgaaggcgagatgataccgcctgccgcgctgcttttcggcctt
tcttcccctgattctgacccacagcctgaagctgtaaggattcctgtcatgagcaaacct
attttggtggtcgtcggccacggtatggtcggccactattttcttgaacagctggttgag
cgcgacctgcatcagcattatcacatcgtggtctttggcgaagaacgccatgaagcctac
gatcgcgttcatctctccgagtatttttccggccgtagcgccgcctcgttgtcgctggta
aaggacggcttttttgccgagagcggcattgaattgcgtagcgccagcgagatcgtagcg
atcgatcgtgaacgtcagtgcgtgtgtgatgcgcagggcaaagaaatcgcctacgacaag
ctggtgttggcgacggggtcctacgcgtttgttccgccgattcccggcaatacgcgcccc
ggctgtctggtgtatcgcacgctggacgatctggatgcgattgcagcacaggcgaaaaaa
gctaaatccggcgtggtgattggtggcggcttgctggggctggaagccgccaacgccctg
cgtcaactggggctggacacccatgtggtggagtttgctccgcgtctgatggcggtacag
ctggatgacggcggtgccaccatgctgcgccgcaagatcgaggcgctgggcgtacagatt
catctcagcaaagaaacgcgggaaatcaccgacggtgagcaggcgctacatcgcctctgt
tttgccgacggcagtgtgctggaaaccgatctggtgctgttttccgccggcattcgcccg
cgcgacaaactggcggatagctgcgatttagagaaagggccgcgcggcggcatcgtgatc
gatgaccgctgccagacgtccgatgatgcgattttcgccatcggcgagtgtgcgctgtgg
aaagggcagattttcgggctggtggcaccgggctaccagatggcacgcagcgtggcggat
acgctggcgcagcgcgatacgccatttaccggtgcggacatgagcaccaagctgaagctg
ttgggcgtagaagtggcctcgattggcgatgcacatgggcgcacggcgggaagccaaagc
taccagtggacggacggcccgaacgaggtctacaagaaaatcgtggtgtctgccgacggc
aagcgtttactgggtgcggtattgatcggcgacagcagcgattacagtacgctgctgcaa
atgatgcttaacgatatgccgttgcctgcacagccggaagggctgattttgcccgcgcgt
tccggtgatgcgccgaaaggattgggcgtggcggcgttacctgccagcgcacagatctgt
tcctgccataacgtcagcaaaggcgatatctcggcggcggtggcgggtggctgcggcgaa
ctgggcgcgctgaaaacctgcaccaaggcgggaacgggctgcggtggctgtgtgccgttg
cttaagcaggtgatggagtatgagctgacgcaactgggcgtcgaagtgaagaaggatatt
tgtgagcacttcgcctattcgcgtcaggagctgtatcacctgattcgcgtgcatgagatc
cgctcgttcgacagccttcttgagcgttacggccacggtttgggctgcgaagtgtgtaag
ccgctggtgggctctatgctggcctcctgctggaatgactacctgctgcaaccgcagcac
ctgccgttgcaggataccaacgatcgtttttttgccaacatccaaaaagacggcacctat
tctgtcgtaccgcgcgttccggcaggagagatcacgccggcggggttgatcgccatcggg
caggtcgcgcagcgctataacctgtataccaagatcaccggcggcccgcgggtagattta
ttcggtgctcgcttagagcagcttccagcgatctggcgtgagctgatcgatgccggattt
gaaaccggtcatgcctacggtaaatcgctgcgtaccgtgaagtcctgcgtggggtcgacc
tggtgccgctatggcgtgcaggactccaccgggttagcgatccaactggagcaccgttac
aagggactgcgctcgccgcataaagtcaaaatggcggtgtctggctgtactcgcgaatgt
gcggaggcacaaagcaaagacatcggcgtgattgccacggacaaaggctggaatctgtac
gtgtgtggcaatggcggcatgaaaccgcgccatgcggatctcttctccagcgatctggat
acggaaaccctgctgcgcaccatcgatcgggtattaatgttctatatccgcaccggcgat
cgcctccagcgcaccagtacctggatggataatctggaaggcggtatcgactatctgcgt
caggtgattctggaagacagcctgaatatcggcgaagagttagataaagagatgcagcgc
gtggtggatgcctaccagtgcgaatggcaaaccacgctggaaagcccggaacgtctggcg
ctgttccgcggcttcctgaacagcgatagcccggatgaagcggtggtaatggtgccagaa
cgcgggcagatccgtccggcgcaggagcatgagaaagcgatatcgccagaaccggtagtg
cttaaacccgccgcgcatgaagcggagtgggtacaggttgcaacgctgagcgacattccg
cgtcatgcaggcatggcggcacgtctcggacagcagcagattgcgctgttccacctgccg
ggcagcgagcagcaggtgtacgcgttagaaaaccacgaaccaggcagcggggcgaacgtg
ttgtcgcgtgggctactgggtgacgtggcgggtgagccggtcgtgatttctccgctgtac
aaaaaacgcttcaagctgcgggatggcgtcagcacggatgacagtgcgttgtatgttcgc
gcctggccggtgcgcgtggaagatgacgaaatttgggtatgccgtcaaccgctggccgtg
ccggaaagcgtcggtttggcagacaatgatatggcgaaagcatcatga
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