Physcomitrium patens (spreading earthmoss): 112273924
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Entry
112273924 CDS
T01041
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112273924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112273924
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
112273924
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112273924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112273924
NCBI-ProteinID:
XP_024358750
LinkDB
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Position
21:complement(4167002..4171709)
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AA seq
443 aa
AA seq
DB search
MAASTGTGVGGGGGTGTGGTRKFKLQKESELRVEVGMDSPLKLQLVIGTAEVFGTELPPM
FWMTFPAAHKFAVFTWHGCTIELDGISEVAYVADETPMVSYVNVHAVLERRRRKAKEALA
ASDAPSTNPPAGPRCIVVGPTDSGKSCLVRMLLGWAAREGWKPTYADLDIGQGSITIPGT
VAATPVEMPIHPIEGVPLDLPLVYFYGHTTPSVNVDLYKVLVKELARTLDIQLVSNSEVQ
AAGMVINTMGWVDGVGYELLLHAIETLRADVVLVLGQEKLYSMLQEVLKVRPGVDIVKLH
KSGGVVNRNSKYRQRTRVLKTKEYFYGLSNDLSPHSSVANFSDLQVFRIGGGPQAPRSAL
PIGAEPTADPTRVVPVGFSRDLLHVVLAVSFAKDPEHLLSSNVAGFIYINEIDMQRKKVT
YMAPCPGPLPSQLLLAGSLAWTE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgagcacgggaactggagttgggggcgggggcggaaccgggacaggagggact
cgcaagttcaagctgcagaaggagagtgagctgcgggtggaagtcggcatggattcgccg
ctcaaattgcagcttgtgattgggacggcagaggtttttggcacggaactgccgcccatg
ttctggatgactttccctgctgcgcacaagtttgctgtatttacttggcatggctgcacg
attgagttggatggtatctccgaagttgcctatgttgccgacgagactccaatggtcagc
tatgtcaatgtgcatgcagtccttgaacgaaggcgcagaaaagctaaggaggctctcgct
gcatctgatgctcccagcaccaacccccctgcaggtcccagatgtatagtggtagggcca
acagattctggaaagagctgcttagtgcggatgttacttggttgggccgccagagaaggt
tggaagccaacgtatgcagatttagacataggccagggctcaatcactattcccggcaca
gttgctgcaacgcctgttgagatgcccatacaccctatcgagggagtcccgctcgacctg
cccctggtgtacttttatggacacactactccaagtgtgaacgtagacttatataaagtg
ttggtgaaagagttggcgcgtactttggatatacagttagtctcaaattctgaagttcag
gctgccggcatggttatcaatactatgggttgggtggatggagttggctatgagttgcta
ttgcatgccatcgagacattgcgagctgatgttgtattggtacttggacaggaaaaatta
tacagcatgcttcaggaagtcctgaaagtaaggcctggtgttgacattgtgaaattacac
aagtctgggggcgttgtgaatcgtaactcaaaatatcgacaacggacacgtgtcctaaaa
acaaaggagtacttttatgggttgtcaaatgatctatctccccattcctcagttgccaac
tttagcgacctgcaagtattccgtattggtggtggtccacaagccccccgatcagcatta
ccaattggtgcagagcctacagcagatcccacacgcgttgtacctgtgggtttcagccgc
gacttgctacacgttgtactcgcggtttcatttgccaaagaccctgagcatctcctttcg
agtaatgttgctggcttcatatacatcaacgagattgacatgcaaaggaaaaaggtgaca
tacatggcaccatgtcctggaccactaccaagtcagttacttctggcaggttcgcttgct
tggacagagtaa
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