Physcomitrium patens (spreading earthmoss): 112291314
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Entry
112291314 CDS
T01041
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020
RNA polymerase
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112291314
09124 Replication and repair
03420 Nucleotide excision repair
112291314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112291314
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112291314
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112291314
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112291314
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112291314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
112291314
NCBI-ProteinID:
XP_024394284
LinkDB
All DBs
Position
14:complement(9205267..9213890)
Genome browser
AA seq
1820 aa
AA seq
DB search
MDQRFAFSPADLARVKTVQFGILSPDEIRQMAVCKIESSETYDRGKPKIGGLSDPRLGTI
DRHTKCETCAGSMTECPGHFGYLELAKPMFHIGFLKTVLSILRCVCYNCSRCLADEEDHR
FKQAKKVRNPKHRLKKVLDCCKSKTKCDTGDDIDENDVMNGEENEKKKSHGGCGAQQPKI
SIDGMKIVAEFKPSRKKGEEPEQHMPEPVERKQQLSAEKVLSILKRISDEECTLLGLNPK
YARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMIIRHNNNLKRQEQNGAPTH
IINEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDF
SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKY
IIREDGQRLDLRFLKKSSDRHLELGYKVERHMNDGDFVLFNRQPSLHKMSIMGHRIRIMP
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIV
QDTLLGCRKVTKRDTFIEKDVFYNILMWWEEFDGKIPIPTILKPRPLWTGKQIFSLIIPK
QINLMRQAFWHPDGEYGDLSPGDTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEVGP
DAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETITKAKHDVKDLIKKAQD
KQLEAQPGRTMKESFENRVNGILNKARDDAGASAQKSLAESNNLKAMVTAGSKGTFINIS
QMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
GREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE
SQKLDSLKMKKAEFNRVYRFEIDRDDWAPDYMSAEAAEDIKTIQEIRNVFDAEVSKLEAD
RRQMGLEIAPTGESNWPLPVNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAVENLQERLR
VVPGNDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMSLV
APGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLTV
YLKPGVNKEKERAKNVQCALEYTTLRSVTQATEIWYDPEPMSTLIEEDMEFVKSYYEMPD
EDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
RIMNDEAPKGEMTEQSEDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDENLAF
VVEQEWVLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRNSLLKELRDVISF
DGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEA
DHLKGVTENIMLGQLAPIGTGDFGLHLNEDMLQHAIELQLPSFEATDYGMTPSRTPMIGT
PHNDGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSPSSPGYSPSSPGYSPLSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYAPTSPAYSPTS
PSYSPTSPGYSPTSPSYSPSSPSYSPTSPSYSPTSPAYSPTSPRYSPSSPSYSPTSPSYS
PTSPSYSPSSPSYMPTSPAYTPGSPSYSPTSPAYTPGSPSYSPTSPNYSPSGGYSPSAPG
YSPSKNEYIPTYSKDDSNSA
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atggaccaacgctttgcgttttctcctgccgacttggcccgggttaaaaccgtgcagttc
ggcatcctcagccccgatgaaatccgtcaaatggcagtatgcaaaatagagagcagtgag
acatatgacaggggcaagcccaagattgggggtcttagtgatccgcggctgggtacgatc
gatcggcataccaagtgtgaaacgtgtgccgggagcatgacggaatgtcctggtcatttt
gggtatctggagctcgcgaaacctatgtttcacattggttttttaaaaaccgtcctttcc
atcttgcgctgtgtttgctacaactgttcccgatgtcttgcggacgaggaagatcatcgt
ttcaagcaagcaaagaaagtgcgtaatccgaagcacaggttgaagaaagtgttggattgt
tgtaaaagcaaaacaaagtgtgacacaggcgatgacattgatgagaatgatgttatgaat
ggagaggaaaacgagaagaagaaatcccatggaggttgtggtgcacagcagcccaagata
tctatagatggcatgaaaattgtggctgaatttaagcctagccggaaaaagggtgaagaa
ccggagcagcatatgcccgagcctgtggagcgcaaacagcagcttagtgcagaaaaggtt
ttaagtattcttaagaggataagcgacgaagaatgtactttattgggtcttaatccaaag
tatgcccgaccggattggatgattttacaggtactccccattccacctcctccagtccgt
ccctctgtcatgatggacagttcggctcgcagtgaggacgacttaacgcatcagttggca
atgatcattcgccacaacaacaatttaaagaggcaggagcaaaatggtgcccctactcat
atcatcaacgagtttgcgcagcttctgcaatttcacatagcaacatacttcgacaatgac
cttccaggacagccaagggctactcaaaggtctgggcgacctatcaaatcaatttgccaa
cgcttgaaggccaaagagggtcgaatccgaggaaatttgatgggaaaacgtgtggatttt
tctgcacgtactgtgatcacgccagatccgaatattaatattgatgaattaggagtgcct
tggagtattgccctcaatttaacttatccggaaactgtgactccctacaacatggagagg
ctgaaggagcttgtagagtacgggcctcatccaccccctggcaagactggtgcgaaatac
atcattagagaagatggtcaacgactggatctgcggttcttgaagaaaagcagcgatcga
cacttggagcttgggtataaggtggaaaggcatatgaatgatggcgattttgtgttgttc
aaccgacaacccagtctgcacaagatgtccattatgggacaccggattcgcataatgcca
tattccactttccggttaaacttgtctgtaacatcgccatacaatgctgattttgatgga
gatgaaatgaatatgcatgtgcctcagtcctttgagactcgagcggaggttctggaactt
atgatggttccaaagtgtattgtatctcctcagtcaaatcgtccagtcattggcattgtg
caagacacacttttgggatgtcgaaaagtgacgaagagggacacttttatagagaaggat
gtgttctataacatacttatgtggtgggaggaatttgatgggaaaatacccattccgacc
attttaaagccgcgccctctctggacagggaaacaaatttttagcttgattattccaaaa
caaatcaacctgatgcgtcaggcattttggcatcctgatggggaatatggtgatctttca
cccggtgacacacaggtgcgtattgaaaagggtgaggtggtggctggcacgctctgtaag
aagactttgggtacgggtcaaggcagtcttattcatgtcatttgggaggaggttgggcct
gatgcagctcggaaatttctggggcatactcagtggctagtaaattactggctattgcag
caaggtttcagtattggtattggggacacaattgctgatgcagcaactatggagaaaatt
aatgaaaccatcaccaaagcaaaacatgacgtcaaggatcttatcaagaaggctcaagac
aagcagcttgaagcgcagccaggtcggactatgaaagaatcttttgagaacagggtcaac
ggaatattgaataaggcccgtgatgacgctggagctagtgcacaaaagagtcttgctgag
agcaacaatctcaaggccatggttacagctgggtcgaagggtacatttatcaatatttcc
caaatgactgcctgtgtggggcagcaaaatgttgaggggaagcgtattccgtacggtttt
gtggaccgtacgctaccacattttacaaaggacgactatgggcctgagagtcgtggattt
gtagaaaattcatatttgcgaggcctgactccacaggaattctttttccatgctatggga
ggaagagaaggtctcattgatacagctgtaaaaacttcggagaccggttacatccaaagg
cgactggtgaaagctatggaggatgtcatggtgaagtatgatgggacagtccgtaattct
cttggagatgtgattcaatttctctatggagaggatggaatggactcagtatggattgag
tcccagaaattggattcattaaaaatgaagaaggcagagttcaatagggtgtacaggttt
gagattgatagagacgattgggcacctgattacatgtctgctgaagctgctgaggatata
aagactatccaagaaatcagaaatgtctttgacgcagaagtatccaagcttgaagctgat
cgcaggcaaatggggttggagattgctccaaccggggagtcaaattggcctcttcctgtc
aatctgaagcgactaatttggaatgcgcagaaaatcttcaaagtggatcttcgtaagtct
tcagatatgcatcctatggagattgtggaggcagtggaaaatcttcaagaaagactaaga
gttgtaccagggaatgaccaaatatcaatggaagcgcaaagaaatgcaactctgtttttt
ggctgtcttctgcgcagcactttagctagcaagagggttctcaaggattaccgtctgaca
agagaggcgttcgagtgggttataggcgaggttgagactcgcttcctcatgtctcttgtg
gctcccggagaaatgatcggttgtgttgctgctcagtcgattggcgagccagctacacag
atgacactaaacacgttccattttgctggtgtgagtgcgaagaatgtgactctgggtgtc
ccacgtttgcgtgagattatcaatgtcgcaaagaagattaagaccccgtccttaacagtg
tatctgaaacctggggtgaacaaagaaaaagaaagggccaagaatgttcagtgtgccctg
gagtatactactcttcgttctgttacccaggcaaccgagatttggtacgatccagagcca
atgagcacattgatcgaggaggacatggagtttgtgaaatcgtactacgaaatgccggat
gaagatgtggctcctgaaaagatttcaccgtggctgctacgtatcgagctcaatcgcgag
atgatggttgacaagaagcttagcatggccgatattgcagagaaaatcaaccttgaattt
gatgatgatttgacctgtatttttaatgatgataatgctgagaaactcattcttcgcatt
cgaatcatgaatgatgaggctcccaaaggagaaatgactgaacaatcagaggatgatgtc
ttcctgaaaaagattgaaagcaacatgctcacagagatggcactgcgaggaatacctgat
atccggaaggtatttatcaaggaagacaagaagaatcggtttgatgagaacttggccttt
gtggtggagcaggaatgggtacttgacacggagggtgttaacatgcttgcggtgatgtgt
cacgaagatgtagatgcttctcgaactaccagtaaccacttgattgaagttattgaggtg
ctgggcattgaagcagttcgaaattctcttctgaaggagttgcgtgatgtcatctctttc
gatggctcatacgtgaactacaggcatcttgcgatcctctgtgatgtcatgacgtaccgt
ggtcacttgatggcaatcacgcgtcatggtatcaacaggaacgatacagggcccatgatg
cggtgttcctttgaagaaaccgtggatatcttattagacgctgcggtgtatgcggaggct
gatcatctgaaaggagtcactgaaaatataatgcttggtcaactggcgcctatagggact
ggtgactttggtctacacctgaatgaggacatgcttcaacacgccattgagttgcagttg
cctagtttcgaagcaactgactatggcatgactccatcacgaacccctatgatcggaacg
ccacacaatgatggcatgatgtcacccagttatctgcttagtccaagtctgcgtgcttct
ccactatcagatgcgcagttttcgccgtacgtcgggaacatgcccttctccccgtcatct
ccaggatacagcccttcctctcctggatacagtcccttgtcaccaggttacagccccaca
tcacctgggtatagtcctacatcacctggttacagtcctacttccccaggttatagtcct
acctctcctggttacagtcccacatcaccttcttacagccctacttctcctggatatagc
ccaacatcaccatcttattctccaacttctccaagttatgcccccacctcgcctagctac
agcccaacctcaccaagttacagtccgacatcaccaagttacagtccgacatcaccaagt
tacagtccgacgtcaccaagttacagcccaacctctcctagctatagcccgacatctcca
gcatacagtcctacttcaccttcctatgctcccacatctcctgcgtacagtccaacttct
ccaagttatagtcccacatctcctggttactcacctacatctccaagttacagcccatcg
tctccgagctacagtcctacctcgcctagttacagccccacatcccctgcttactctcct
accagtcctcgttattctccttccagtccctcatatagcccaacttcccccagttacagt
cctacgtcaccatcgtattctccatcgtcaccctcgtacatgcctacgagtcctgcgtat
accccagggtcaccttcatattctccaacaagtcctgcttatactcctggaagtccttca
tacagtcctacttctccaaattacagtcccagcggaggctattctccatcagctccagga
tattccccatcaaagaatgaatatattccaacttatagcaaagatgacagcaatagtgca
tga
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integrated database retrieval system
