Physcomitrium patens (spreading earthmoss): 112294649
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Entry
112294649 CDS
T01041
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112294649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112294649
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112294649
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
112294649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
112294649
NCBI-ProteinID:
XP_024401109
LinkDB
All DBs
Position
17:3806066..3817807
Genome browser
AA seq
1409 aa
AA seq
DB search
MGRGGGGGGAAGIGGTAMGAPIAPAHASINFSKRPFIEDVGPRKIESIRFGTMSKQDIVK
ASELHVYESMLYTMPERNPAPYSVVDTRLGTTNKKGECSTCFGKLADCPGHFGHTKLEMP
VFHIGYLKNILQILQCICKSCARILMPEEECKLILRKMRNPRIEVLQRRAVLKKVIDRCK
RVRVCTRCGDYNGVVKKMAQPPVKLIHDKYGKALDLKEEMIVSLEDAMKCKPELKNCINR
VYDNLDPMRVLQLFESMIEQDCEVLDLAERPEKLIVTHLIVPPVAIRPSVEMESAAGSNE
DDITVRLLGILNCNNSLRTCVEQGLAAEKTMETWELLQSQVSQLINSETPVPRSEQPTSG
KQPRGFVQRLKGKQGRFRGNLSGKRVDFTGRTVISPDPNLKITEVAVPLLMAQLLTYPEK
VSRYNIDKLRGRIINGMTKHPGANFIIFPDGNKLYLKFGDRRRYAAELKYGDIVERHLED
GDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEAR
TEALMLMGVANNLCTPKNGEILVASTQDFLTSSYLFTRKDTFYDRATFTQACVYMGDAAE
NIDLPTPSIIKPMELWTGKQLFSVLVRPNAKTRVFVNLVSYEKNYDKKANKGSMCPTDGY
VYFRNSELICGQLGKATLGNGNKDGLFTVLLRDYGNEAAAVCMNRLAKLSARWIGNHGFS
IGIDDVAPSDRLNREKEKQITKGYNACDQHIQLYKKGKLELQPGCNAAQTLESAVTGELN
KIREAAGNVCKDELHWRNSPLIMSECGSKGSFINISQMVACVGQQSVGGKRAPNGFIDRT
LPHFPRHDRTPQGKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK
ALEDLSAQYDGTVRNSSGGIVQLLYGDDGMDPVYMEGKDGAPFNLDRMLMKTKATCPSYG
QLGLPPTEIEKLFNERLTKPDMTSETVGAFKTSLKKFMDSCIKDNISTRTKLGLPLDCNG
GPDQTLLESTATYISGLTSRQLEVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMT
LKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTT
LGEVAKSIKTVLRASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIV
DRDKLIVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVINKEKGVYNLLVEGTNL
KAVMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMTIDARHMMLLAD
VMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIEGVSECIIMGIP
MPIGTGLFKIRQKVEKLPKLSYGPTPLLS
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcggagggggaggtggaggtgccgctgggattggcggtactgccatgggggcg
ccaattgctcctgcccatgcctccatcaatttttcaaagcggcccttcattgaggatgtc
ggaccccgcaagatcgagagcattcgttttgggacaatgtcgaagcaagatattgtcaaa
gcttctgagttacacgtgtacgagtcaatgctttacactatgccggaaaggaatccagct
ccatactcagttgtcgacactcggctgggaacaacgaataagaagggagagtgttctact
tgttttggaaagttggccgattgccccgggcactttggacacacgaagcttgagatgcca
gtttttcacattggttatcttaaaaacattctccaaattctgcagtgcatttgcaagtca
tgtgcccgaattctgatgccggaggaagaatgcaaattgattcttcgcaagatgcgaaat
ccgcggatcgaggtattgcagaggcgtgcagttttgaagaaggtcatcgataggtgtaag
cgagtgcgcgtttgtactcgttgtggagattataacggggtggtgaagaaaatggcacaa
ccaccagtaaaacttattcatgacaagtatggcaaggctttagatctaaaagaggagatg
attgtatcactggaggatgctatgaagtgcaagccagaactaaagaattgtattaatcgc
gtttatgataaccttgatcctatgagagtgcttcagctgtttgaatctatgattgaacag
gattgcgaggtgcttgatttagcggaaagaccagaaaaattaattgtaacgcatttgatt
gtgcccccggtggccattcgaccttctgtggaaatggaatccgcagctggaagcaatgaa
gatgacattacagtgcggcttttgggaatcttgaactgcaacaattctcttcgtacctgt
gtggagcaagggttggctgcagaaaaaacaatggaaacctgggaactacttcagtcacag
gtctcacaattgatcaacagtgaaacaccagttcctcgttctgaacaacccacttctggc
aagcagcctcgaggttttgtgcagcgtttgaagggaaaacagggtcggttccgtggaaat
ctctctggtaaaagggttgacttcactggccgaactgttatttcaccagatccaaatctg
aaaatcacggaggttgccgtcccattgctgatggcgcagcttttaacctatccagagaag
gtatctcgttataacatcgacaaattacgagggcgtattattaatggcatgacaaaacat
cctggagccaacttcataatatttcccgatggcaataaattgtacttgaagtttggtgat
cgaagacgatatgcagctgagctcaaatacggtgacatcgtagaaaggcatctggaagac
ggagatattgtactttttaaccggcaacctagtctgcacaggatgtctatcatgtcacac
agggcaagaattatgccatggcgtacgcttcgatttaacgagtccgtttgtaacccgtat
aatgctgacttcgacggtgatgaaatgaatctgcatgttcctcaaactgaggaagcccga
actgaagcgctgatgcttatgggggtggccaacaatttgtgtactcctaagaatggcgag
atattggttgcttcaacacaggatttcttgacatcttcttacttgttcacaaggaaggac
actttctacgatcgtgctacatttacacaggcatgcgtttacatgggggatgcagcagaa
aatattgaccttccaactccaagcattatcaagcccatggagttgtggacaggaaagcag
ctttttagcgttctcgtgcgaccaaatgctaagacaagggtgtttgttaacttggtttcg
tatgagaaaaattacgataaaaaagccaataaagggtccatgtgtcctactgatggctac
gtttattttcggaatagtgagttgatatgtgggcaacttggcaaggctacattagggaat
ggtaataaggatggccttttcactgttctccttagagactatggcaatgaagcagctgcg
gtttgcatgaataggctagcaaaactcagtgcgaggtggattggaaaccatgggttttca
attggtattgatgacgtggcccctagtgatcgtttgaatcgagaaaaggagaagcagatt
acaaaaggatataatgcttgtgatcaacatattcagttgtataagaaagggaaattggag
cttcagccaggttgtaatgccgctcagactcttgagtctgcagtcacaggagagctgaat
aaaattcgggaggctgctggaaatgtgtgtaaagatgagttacattggcgcaacagcccg
ctcatcatgtcggaatgtggatctaaaggttctttcatcaatatcagccagatggttgct
tgcgtcggtcagcagtctgttggaggtaaacgtgcccctaatggatttattgatcggacg
ttacctcattttccaaggcatgatcgaacacctcagggcaagggttttgttgcgaactcc
ttttacagtgggctctctgctactgagttcttttttcacactatgggtggacgagaggga
cttgtggataccgcagtgaaaacagccgaaactggatacatgtctcgtcgtttgatgaaa
gctttggaggatttatctgcgcagtatgatggtactgtacgaaattcgagtggaggaata
gttcaacttttgtacggagatgacggtatggatcccgtatacatggagggtaaagatgga
gctccattcaatcttgaccggatgctcatgaaaactaaggcaacatgcccttcatatgga
cagctcggtctccctcctactgaaattgaaaagctattcaatgagaggcttacaaagcca
gatatgacttccgaaacagtaggcgctttcaagacgtcattgaaaaaattcatggactct
tgtatcaaagataacatatcaacacggaccaagctggggttgcctcttgactgtaatgga
ggtcctgatcagacattgctggaaagcacagctacctacatttctgggcttacctcccgg
cagctggaggtgtttctggatacatgtattaaaaggtatcatatgaagcgtgtggagcct
ggcgcagctgtgggagctgttggagcgcagagtatcggagagcctggaacacaaatgact
ctaaaaacttttcattttgctggtgtggcaagtatgaacattacacttggagtgccgcga
atcaaggagatcatcaatgcatcgaagaacatcagtacccccattatcaccgcagtactc
gtgagcgggaatgatgagaaagcagcacgaattgtgaaaggtcgcattgaaaaaactacg
cttggagaggtagcgaaaagcataaagacagtgctgagggctagtcaagcaattatttca
gtaaagctcgatatgaaacgaatcgacgcacttcaacttgacatcaattctgacactgtt
gcactggctattgtccaaactcctaaaattaaactcaagcatgtgaatattagaattgtg
gatcgcgacaagcttattgtcataccaccggatcaggacaagggcaagctgtacttttac
cttcattcgctttgcaatatgctcccaaaagtcattgtgaagggcataccatctgttgaa
cgagctgttatcaacaaagaaaaaggtgtatacaatcttctagtggaagggacaaatctg
aaggctgttatgggcatatctggagttaatgggaaactcaccaagagcaaccatgtcata
gaagcagagcagacgttgggaatagaggcagcaaggaatgttatcattgatgaaattcag
tatactatgggcagccatggaatgaccatcgatgcacggcatatgatgttacttgccgac
gttatgacatacaagggtgaagttcttggaatcacaaggtttggtatagcaaagatgaaa
gatagtgtgcttatgctggcatcgttcgagaagaccactgaccacttgtttgatgctgct
attcacgggcgtgttgataagatcgaaggtgttagtgaatgtattatcatgggaattccg
atgcccataggaactggtcttttcaagatccgccagaaggtggagaaacttccgaaattg
tcttatggccctacgccacttttgtcataa
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