Poeciliopsis prolifica (blackstripe livebearer): 129362957
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Entry
129362957 CDS
T09758
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129362957 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprl03021
]
129362957 (polr1a)
Enzymes [BR:
pprl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129362957 (polr1a)
Transcription machinery [BR:
pprl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129362957 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
129362957
NCBI-ProteinID:
XP_054890770
LinkDB
All DBs
Position
Unknown
AA seq
1715 aa
AA seq
DB search
MLFSKEVPWRRLEGMSFGFYTTEEIRKLSVKTITNSRLLDGVGNVAQNSLYDLALGPTDT
KEICSTCCQDFNNCPGHFGHIELPLPVFNPLFFDKLYLLIRGSCLLCHMLTCPRAAIHLL
VNQLRLLEHGAMVEVHLVESVLNQHLEENPKATGDEIEQVLREFTSMVIGANAEASQNFK
PIKHLVEKKSSLINNFWKVHMNSRKCSYCRGGKSMVRREHNSKLIITMPTGGQTAENTGI
AEDLMGKRVFLMASTAREHISKVWEKEGFFLKLLFPGLAESSGSEGQEGFYPNLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCAVIRKLLALIAGEKQTEEQEEGVVRER
HGFLLGTLYLSSLFILPFVSPPQTFEADDQTFLSGISGATLQDKLYNTWSRLQSHVNIVF
DSDMDKLITDKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVF
ATKLTYPQPVTPWNVKELRQAVLNGPNVHPGASMVINEDGMKTILSPSNATQREAVAKQL
LTPCPGPHKMPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCK
AYNADFDGDEMNAHFPQTELGRAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTKMTI
RGCFFTKDQYTELVYRGLTDKKGRIRLLAPAVLKPQQLWTGKQVVSTLLLNVLPDKAVPL
NLTGKAKIPGKAWIQLPPRSSPGYNPESMCESQVVIRQGELLVGVLDKAHYGSSAYGLVH
CCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKPGANMRRKQIIQESLKIG
TKALQAAFNLPPSTTPAEAASRWQDAHLSPDQRDFSLADHKFKEVANQVNNDINKVCMPV
GLHTPFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDP
SPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQY
DLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIENNYEVIRRSQDLDSVLARLDPH
TAARHFTAIQRWKAKRELACPRRGAFLLFSQKKLAKLREAIPSTEPLPAQDPAVLQLVKD
WHSLDEASRVKYTRRSSRCPEPTLGLFRPDVCFGSVSENFHDITEKYFQNRGNATEDGME
TQRLRQLLHYKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRL
REILMVANSNIKTPMMSVPVLNNKKALKRAKTLRKQLTRVCLAEVLQKVDVVETLRIETN
QTLQSFKVTFHFLPPERYCDDKLLTPHQILHYMETRFFRLLLEAIKKRSAKLASIAVETR
KATYGDKNMDEDGTADDQDGGGEEEEEGEIVDDQGNEGDADASDAKRKSKQAEEVDYESE
DEGEGSDAEEDQGEEENSQANAAEETQPESADTGEQQQQEEKTRVRPSRGSLVQMRVNSV
LSSNSAIQRYSFDQQEELWCEVELEFPLNRVHFDLTSVLSTLAQNAVIMETRGLTRCLLS
ETTTKSGEKQTVLNTEGINMHEIFKYNDILDINKLYSNEVHAMASTYGIEVALKVIEKEI
KDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIMSNSSPLQQMTFETSFKFLKQAT
MLGSHDQLVSPSACLVVGKVVKGGTGLFELKQPLQ
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccaaagaagtgccatggcggcggctggagggcatgtcgttcggcttttac
acaaccgaagagataagaaagttgagcgtgaaaaccatcaccaactccaggcttctggac
ggcgttggaaatgtggcccagaacagtttgtatgacctggctctggggccaacagacacc
aaagagatttgttccacctgctgtcaggatttcaacaactgtccaggacactttggacac
atcgagctgcctctaccagtcttcaacccgctgttctttgataaactgtacctgttgatc
cgcggctcgtgcctgttgtgtcacatgttgacgtgtccccgcgccgccatccacctgctg
gtgaaccagctccggttactggagcatggagccatggtggaggtacatcttgtggagagc
gttcttaatcagcaccttgaagaaaaccccaaagccacaggagacgagatcgagcaggtg
ctgagggagttcaccagcatggtcattggagcgaacgccgaggcttcacagaacttcaaa
cctattaaacatctggtggagaagaagagcagcttgataaacaacttctggaaggtccac
atgaactccaggaagtgttcgtattgcagaggtggcaagtcaatggtgcgtcgcgaacac
aacagcaagctgatcatcaccatgccaacgggaggacagactgctgaaaacacaggtatt
gcagaagatctgatgggaaagagagtgtttctcatggccagcaccgctagggagcacatc
agtaaagtctgggagaaagagggttttttcctgaagttgctgtttcctggtctggcggag
agctcaggatctgagggacaggagggtttctaccccaacctgttcttcctggagctgctg
gtggttccaccctgcaggtatcgccccattaatcgcctaggtgaccagatgttcaccaac
ggccagacggtcaacatgcaggctgtgatgaaggactgcgccgtcatcaggaagcttctg
gctctcatagcaggagagaagcaaactgaggagcaggaggagggagtggtgagggagcgt
cacggcttccttttgggaacactttatctcagctctttatttatcctaccatttgtttct
cctccccagacgtttgaggcagacgatcaaacgttcctgtcgggaatcagtggagcgacg
ttacaggataagctctataacacgtggagccgcctgcagagccatgtcaacattgtcttc
gacagtgatatggacaaactgataacggataaataccctgggatcagacagatcctggaa
aagaaggatggattgttccggaagcacatgatggggaagcgggtggactacgccgcccgg
tccgtcatctgtcccgacatgtacatcggaaccaatgagatcgggatccccatggtgttt
gccaccaagctgacctaccctcagcccgtcacgccttggaacgtgaaggagctccggcag
gccgtcctcaacgggcccaacgtccaccccggcgcctccatggtgattaacgaggacggc
atgaagaccatcctgtcgcccagtaacgccacgcagagggaggcggtcgccaagcaactg
ctgacgccctgtcccggtccacacaagatgcccatgaagattgtgaatcgacacataaag
aatggagacgttctgctgctcaacagacagcccaccctgcacagaccctccatacaagcc
cactgcgctcgcatcttacctggagagaaggtcctgcggcttcactacgccaactgcaag
gcgtacaacgccgactttgacggagacgagatgaacgcccacttccctcagactgaactg
ggccgagccgaggcctacacgctggtcagcaccaaccagcagtacctcgtccccaaggac
ggtaaacctttagcaggcctcatccaagaccacatggtgtcaggaaccaagatgaccatc
agaggctgcttcttcaccaaggaccagtacaccgagctggtgtaccgagggctgaccgac
aagaagggccggatcaggctgctggcccccgctgtcctcaaacctcagcagctgtggacc
gggaagcaggtcgtctccactttattgctgaacgttctcccagacaaagccgtcccgctt
aacctcaccggcaaagccaaaatccctggcaaggcttggatccagctcccacctcgatct
tctcctgggtacaacccagagagcatgtgtgagtcacaggtggtgatccgtcagggcgaa
ctgctggtcggtgttctggacaaagcgcactacggctcatcggcctacggattggtccac
tgttgctacgagctttacggaggggagaccagcgggaagctactcagctgccttgctcga
ctcttcactgcctacctgcaactctacaggggcttcactctgggagtggaagacattctg
gtgaaacctggagccaatatgcggaggaaacaaatcatccaagagtctctgaaaattggc
accaaggccctgcaggctgccttcaacttgcctcccagcacgactccggctgaagctgcc
agtcggtggcaggacgctcacctcagccccgaccagagagactttagcttggccgatcac
aaattcaaggaagtggccaatcaagtgaacaacgacatcaacaaggtgtgtatgccagtc
ggactgcacaccccgttcccagacaacaacctccagctcatggtgcagtctggagctaaa
ggttccaccgtcaacactatgcagatctcctgcctgctgggccagatagagctggaaggc
cgccggccgcccctgatgccttcaggaaagtttctgccttgcttccagccatatgaccct
tcgcctggcgcggggggcttcgtttctggacgcttcctcacaggaatcaagccacaggag
tttttctttcactgcatggctgggagagaaggactggtggacacggctgtgaaaacgtcc
cgatcaggatatctgcagagatgcatcataaagcacttggagggtctggtggtgcagtat
gacctgaccgtcagagacagcgacggctccgtggtccagttcctgtatggcgaggatggg
ctggacattcccaagacccagttcctgcagcccaggcagttcccattcatcgagaacaac
tacgaggtcatcaggaggtcacaggacctggacagcgttctggcccgtttggaccctcac
actgcagcccgccacttcacagccatccagcgctggaaagcaaagagagagctggcgtgt
ccccggagaggtgcctttctactgttttcccagaagaagttagcaaaactacgagaggcc
atcccgtcaactgagccgctgcccgctcaagatcctgcagtgctgcagctggtgaaggac
tggcactctctggacgaagccagcagagtcaaatacaccaggcggtcgtcccgctgccct
gagccgaccctgggcctgttcaggcccgacgtctgcttcgggtcggtgtcggaaaacttc
catgacatcaccgaaaagtactttcagaacagaggtaacgccacggaggacggcatggag
acgcagaggctgcgacagctgctgcactataagtggcagcgctccctgtgtgatccgggg
gaagctgtgggcctgctggcagctcagtccataggtgagccctccacccagatgaccctc
aacaccttccactttgcgggcagaggagagatgaacgtcactctgggaatccctcgactg
agggagatcctgatggtggccaattccaacattaaaacccccatgatgagcgtcccggtg
ctgaacaacaagaaggccttgaagagggccaaaacgctgcggaagcagctcaccagagtc
tgcctcgctgaggtgctgcagaaggtggacgttgtcgagacgcttcgcatcgaaactaat
caaacactgcaatcgtttaaagtcacctttcacttcctgcctccggagcgttactgtgac
gacaaactgttaactccccatcagatcctccactacatggagacgaggtttttccgtctc
ctcctggaagccattaaaaagcgttcagccaagctggcctccatcgccgtggagacgagg
aaggccacctatggagataaaaacatggatgaggatgggaccgcagacgaccaggacggt
ggtggagaagaggaggaggaaggagagattgtcgatgaccaggggaatgaaggagacgct
gatgcatcagacgccaagaggaaaagcaaacaggcagaggaggtagactacgaaagcgaa
gacgagggcgaaggcagcgatgctgaagaggatcagggtgaggaggagaacagccaggca
aacgcagcggaggagacccaaccagagtcagcagacactggagagcagcagcagcaggag
gaaaaaacaagagtgaggccaagtagaggctccctggtccagatgagggtgaactcagtt
ctgtcttctaactcggccatacagagatactccttcgatcagcaggaagaactctggtgt
gaggtggagctggagttccctttgaacagggtccacttcgacctgacctcggtcctgtcg
actctggcccagaacgccgtcatcatggagacccgaggcctgacgcggtgccttctgagc
gagaccacaaccaagtctggggaaaaacagacggttctcaacacagagggcatcaacatg
cacgaaatctttaagtacaacgatatcctggacatcaacaaactgtactccaatgaggtc
cacgccatggccagcacctacgggatcgaagtggctctgaaagtcatagagaaggagatc
aaagatgtctttgcagtttatgggattgaggttgaccccaggcatctgtcgttggtggca
gactacatgtgtttcgaaggcgtctacaagccgttaaaccgacacgccatcatgtcgaac
tcttcccctctgcagcagatgaccttcgagaccagcttcaagttcctcaaacaggccacc
atgctggggtcacatgatcagctggtttctccctcggcctgcttggttgtggggaaggtg
gtcaaaggtggaacaggactgtttgaactgaagcagcctctgcagtag
DBGET
integrated database retrieval system
