Pimephales promelas (fathead minnow): 120464363
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Entry
120464363 CDS
T08155
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120464363 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120464363 (polr1a)
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120464363 (polr1a)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120464363 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
Motif
Other DBs
NCBI-GeneID:
120464363
NCBI-ProteinID:
XP_039509714
LinkDB
All DBs
Position
Unknown
AA seq
1691 aa
AA seq
DB search
MQFSKETPWRRLEGMSFGLYDADELRRLSVKTVTNPELLEGVGSAAPNGLYDLALGPADS
KEICSTCMQDYDSCPGHLGIVELPLPVYNPLFFSNLYMLIRGSCLQCHLMLCPRAALHLL
LGQLKLLDVGALNEAYELEQVLNQLLEVNAQPTSIEIQETLDAFINPILKARPDKHHTAP
IRHVCEKKVSLIHRFWRIHMATRKCPNCKIRVSVRHEHNSKLIISSISLQADDHQLTKRG
FLTPSVAREHITKLWENDGFFLKHLLSGFSTSDSGSDFNPDAFFLDLLVVPPCKFRPVNR
LGDQMFTNGQTVNLQYVIKDNHTIQKLLALIAAEKNSAGTDECDEATEASEIDQSFLVGI
TGVTLTDKLYSTWIRLQSHVNIVFDSDMDKLMTEKFPGVRQLLEKKEGLFRKHMMGKRVD
FAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPDVHPGASMVI
NEDGSRTILSSSSATQREAVAKQLMTPTTGQHKMPMKIVNRHIRNGDVLLLNRQPTLHRP
SIQAHNARILPGEKVLRLHYSNCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTDQQYL
VPKDGKPLAGLIQDHIVSGSSMTIRGCFFTRDQYTALVYRGLTDRSGRVKLLRPALIKPV
QLWTGKQVVSTLLLNVIPENCIPLNLTGKAKIPSKAWVKEPPRSVPGYSPESMCESQVVI
RQGELLMGVLDKAQYGSSAYGLVHCCYELYGGQTSGKLLSCLARLFTAFLQLYRGFTLGV
EDILVKDGANKLRRKMIQKSVSCGSKALRAAFNLPASAGDAEARERWQDAHLNTDQRDFN
MVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISCLLGQI
ELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPQEFFFHCMAGREGLVDTA
VKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDVPKIQFLQPRQFPF
IKDNYEVIRKSKCLDEVLDKMDPQEAVNHFKAIKRWKAKHERVSPRDGGFLLFSQKKMSK
LKSQLEVQDLANGREAASGQLVERWRALDEAGRRRYLKKTSRCPDPCLAVHRPDICFGSV
SETFEAIVENYLDQFNVKQEFPVSSETVDSDRLRPLLQLKWQRALCDPGEAVGLLAAQSI
GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASPNIKTPMMSIPVLANKKALKRVK
TLRKKLTRVCLSEVLHKVDVIETFRMPKKRGDKSRVFKLTFQFLPPERYQQDKLLTPDEI
LRFMEQRFFRLFLEAIKKLSVKLAAISMVDTRRATAGDGEGEAAGVAATEGEGTEDAENN
MIVDDVANEGDADATDSRRKEKQEEEVDYESEGGEQGSDQEQEVAEDTQEGAEDNQEVTS
HTQEEAESSDETPPPERSEQPQSDSEETLRINAVLQLSAAVEDYKYDTVNGLWCELTLVL
PVSKVHFDLTSVVSQQAHSAVIMETKGISRCLLNEVTTKEGSKELVLNTEGINLHEMFNH
ADILDLNRLYSNEVHAIANTYGIEVALRVIEKEITDVFAVYGIEVDPRHLSLVAEYMCFE
GVYQPLNRFSIRSSSSPLQQMTFESSYRFLKQATMMGSCDKLRSPSACLVAGKVVKGGTG
IFDLKQPLNRD
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttcaaaagaaacaccatggaggcgattggagggcatgtcgtttggcttgtac
gacgctgatgaattaaggaggctgagtgtgaagacggtcacgaacccggagctgctggaa
ggcgtgggcagtgcggccccgaacgggctgtatgatctggctctgggccccgccgacagc
aaggagatctgctccacctgcatgcaggactacgacagctgtccgggacacctgggcatc
gtggagctgcccctgcccgtctacaacccgctcttcttcagcaacttgtacatgctgatc
cgaggttcgtgcctccagtgccacctcatgctgtgcccgcgcgcggcgctgcatctgctg
ctgggacagctcaagctcttggacgtgggcgcgctcaatgaggcgtacgagctcgagcaa
gtgctcaaccagttgctggaggtcaacgcccagccgacctctatagagatccaggaaacc
ctggacgcgttcatcaatcccatcctcaaagccaggccagacaagcatcacactgctcct
atcagacatgtgtgtgagaagaaggtaagcctcatccacaggttctggaggatacacatg
gccacacggaaatgtccgaattgcaagatcagagtgtctgtgcgccatgaacacaacagc
aaactcatcatctcgtccatctcgctacaggccgatgatcaccagctgaccaagcgtggc
ttcctgacgccgagtgtggcgcgagagcacatcaccaaactctgggagaacgacgggttc
ttcctgaagcatctgttatcaggcttcagcacgagcgactcgggctcagacttcaatccc
gatgcgttcttcctggatctgctggtggttcctccatgcaagttcaggcctgttaatcga
ttgggagaccagatgttcaccaacggacagactgttaacctgcagtacgtgataaaggat
aatcacaccatccagaagttgctcgcactaatcgctgcggagaaaaacagcgccgggacg
gatgagtgtgatgaagcgacggaggccagcgagatcgatcagtccttcttagtgggcatt
accggagtgactctcacagacaagctgtacagcacctggatccgcctgcagagccacgtc
aacatcgtgttcgacagcgacatggacaagctcatgaccgagaagttccccggcgtccgt
cagctcctggagaagaaggagggcttgttcaggaagcacatgatggggaagcgtgtggac
ttcgctgcgcgctctgtcatttgccctgatatgtacatcgaaaccaatgagattggaata
ccaatggtgttcgccacgaagctgacgtacccgcagccggtgacgccctggaacgtgaag
gagctgcggcaggcggtgctgaacgggcccgatgtgcaccccggggcctccatggtgatc
aacgaggacggctcgcgcaccatcctcagcagcagcagcgccacccagagggaggcggtg
gccaagcagctgatgacgcccaccaccggccagcacaagatgcccatgaagatcgtgaat
cgccacatcaggaacggggacgtgcttctgttgaaccgccagcccactctgcatcggccg
tccatccaggcccacaacgcccggatcctgcccggggagaaggtgctccgcctccactac
tccaactgcaaggcctacaacgcggacttcgacggggacgagatgaacgcccacttcccc
cagagcgagctgggccgggccgaggcctacacactcgtgagcacggaccagcagtacctc
gtgcccaaggacgggaagccgctggccggcctgatccaggaccacatcgtgtccggctcc
agcatgaccatccgcgggtgtttcttcacacgggatcagtacacggctctcgtctaccga
ggcctgacggaccggagcggccgggtgaagctgctgcggcccgcgctcatcaaacccgtg
cagctctggaccgggaaacaggtggtgtcaaccctcttgctgaacgtcatcccagaaaac
tgcatccctttaaacttgacgggaaaggcgaagattcccagtaaagcctgggtgaaggag
cctcccagatctgttcccggatacagtcccgagtctatgtgtgaatcccaggtggtgatc
cgccagggcgagctcctgatgggggttctggataaggctcagtacggcagctcggcgtac
ggcctggtccactgctgctacgagctgtacggcggacagacgagcgggaaactgctcagc
tgcctcgcgcgactcttcaccgctttcctgcagctctaccgcggcttcaccctgggtgtg
gaggacattctcgtcaaagatggagccaacaaactacgaaggaaaatgatccagaagtca
gtctcatgcggctccaaggctctccgggccgcgtttaacctgcccgcgtccgccggagac
gccgaagcccgagagcgctggcaggacgcacacctcaacacagaccagagagacttcaac
atggtggacctgaagttcaaagaggaggtcaatcaagtgaacaacaacatcaacaaggtg
tgcatgccgctgggtctccatcgctccttcccagagaacaacctccagctgatggtgcag
tccggggccaagggctcgacggtcaacaccatgcagatctcctgtttactgggccagatt
gagctggagggccgccggccaccactgatgccttctgggaaatccctgccctgctttcag
ccctatgaaccgcagccgcgctccggaggattcgtgaccggcaggttcctgacagggatc
aagcctcaggagttcttcttccattgcatggccggtcgtgaaggactcgtggacacggcg
gtcaaaaccagtcgatctggttatctgcagaggtgtgtgatcaagcatctggagggtctg
gtggtccagtatgatctgactgtgcgggacagtgatggaagcgtggtccagtttctgtac
ggggaagacgggctcgacgtccccaagatccagttcctacagccgcgccagttccccttc
atcaaagacaactacgaggttatcagaaagtcgaagtgcttggatgaagtcctggataag
atggacccacaggaagcggttaatcactttaaagccattaagagatggaaggcgaaacat
gagcgtgtttctccccgagacggtggctttctgctgttctcgcagaagaagatgagcaag
ctgaagtctcagctggaggtgcaggatctggccaacgggagagaggcggcctctggacag
ctcgtggagcggtggagggctctggacgaggcgggccggaggaggtatctgaagaagacg
tctcgctgccctgacccgtgtctggctgttcaccggcccgacatctgcttcggctccgtg
tccgagaccttcgaggccatcgtggagaactacctcgaccagttcaacgtcaagcaggag
tttccggtgtcttctgagaccgtggactccgatagactcaggcccctcctgcagctgaag
tggcagcgggcgctgtgtgaccccggggaggcggtgggtctgctggcggctcagagcatc
ggggagccctccacacagatgaccctcaacaccttccacttcgccggcaggggcgagatg
aacgtcacgctcggcattcccaggttaagagaaatcctcctgatcgccagcccgaacatc
aagacccccatgatgagcatcccagtcctggccaacaagaaagccttgaagcgtgtgaag
accctgcggaagaagctgacacgcgtgtgtctatcagaggtgctccacaaggtggacgtg
atcgaaaccttccgcatgccgaagaagcgaggcgacaaatcccgcgtcttcaagctcacg
ttccagttcctgcctcccgagcgataccagcaggacaagctgctgacccccgacgagatc
ctgcgcttcatggagcagaggttcttccggctgtttctggaggccatcaagaagctgagc
gttaaactggcggccatcagtatggtggacacgcgcagagccacggccggcgacggagag
ggggaggccgcgggagtcgccgccacagagggtgaaggcactgaggatgcagaaaacaac
atgattgtggatgacgtggcgaatgaaggtgatgctgatgccacggactccaggagaaaa
gagaaacaggaagaggaggtggactatgagagtgaggggggcgagcagggaagtgatcag
gaacaggaagtggctgaggacacacaggaaggggccgaggacaatcaggaagtgacctca
cacacacaggaagaggcggaatcttctgacgagaccccgcctcctgagcgctctgaacag
ccgcagtcagactccgaggagaccttgaggatcaacgctgtgcttcagttgagcgccgct
gtggaggactacaaatacgacactgtgaacgggctgtggtgtgagctgaccctggtgctg
cccgtcagtaaggtgcacttcgacctgacgtcagtggtgtcccagcaggcccacagcgcc
gtcatcatggagaccaagggcatctcgcgctgcttgctgaacgaagtcaccacgaaggag
ggcagcaaagagctggtgctcaacactgagggcatcaacttacacgagatgttcaaccat
gctgacatcctggacttgaaccggttatactccaacgaggtccatgctatagcaaacaca
tacggcatcgaggtggccctgcgagtcatcgagaaggagatcacagatgtcttcgctgtc
tatgggatcgaggtggacccgcggcacctctctctggtggccgagtacatgtgtttcgag
ggtgtgtaccagcccctgaaccgcttcagcatccgctccagcagctctccactgcagcag
atgaccttcgagtcctcctaccgcttcctcaagcaggccaccatgatgggctcctgtgat
aaactgcgatcgccctcggcttgcttggttgcagggaaggttgtgaaaggaggaaccggc
atcttcgatctgaaacagccgttaaaccgagactga
DBGET
integrated database retrieval system
