Pimephales promelas (fathead minnow): 120471504
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Entry
120471504 CDS
T08155
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03020
RNA polymerase
pprm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120471504 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
120471504 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120471504 (polr2a)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120471504 (polr2a)
Enzymes [BR:
pprm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120471504 (polr2a)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120471504 (polr2a)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120471504 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120471504
NCBI-ProteinID:
XP_039517259
LinkDB
All DBs
Position
Unknown
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIVRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAHVQSALEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPVRVVEGVQELSKKLVI
VNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagcccagatgaacttaaacgaatgtccgttactgaagggggcatcaag
taccctgagaccacagagggaggacgccctaaactggggggactcatggacccccggcaa
ggggtaattgagaggtcaggcagatgccagacgtgtgcaggtaacatgactgagtgtcct
ggtcattttggtcacattgagctggctaagccagtctttcatgttggcttcatcacaaag
attatgaaggtcctccgctgtgtgtgtttcttctgttcaaagctccttgtggactcgaac
aatccaaaaatcaaagacatcttgaccaagtcgaaggggcagccacggaagcgtctgacc
catgtttatgacctctgtaaaggcaaaaatatttgtgagggtggagaggagatggacaac
aagtttggagtggagcagcaggagaccgaggaagacctcaccaaagagaagggtcatgga
ggttgtggcagataccagccacgtatccgacgctctggcctggagctctatgctgagtgg
aagcacgtgaatgaagactctcaagagaagaagattctcctcagccctgaacgcgtgcat
gagatcttcaaacgcatttcagatgaagaggacatgatcctgggcatggaccccaaatac
gctcgtcctgagtggatgattgtcactgttttgcctgtaccccctcttgctgtgagaccg
gctgtggtcatgcagggctctgctagaaaccaggatgatttaacacacaagttggctgac
attgtgaagatcaataaccagctgaagcgaaatgagcagagtggagctgcagctcatgtt
atagcagaggatgtcaagctgcttcagttccatgtggccaccatggtggacaatgaactg
ccaggtctacctagggcaatgcaaaagtctggtcgcccactaaaatccatcaagcagagg
ctaaagggtaaggaaggacgtgtcagaggtaatctgatggggaagcgtgtagacttctct
gcacgaactgtcattacacctgaccccaacctgcagattgaccaggtgggagttccccgt
tccattgctgcaaacatgaccttccccgaaatcgtcacaccctttaacattgacagactc
caagagcttgtgaggagaggtaacagtcagtatcctggagccaaatatatcgtccgtgac
aatggggacagaattgacctgagattccaccctaaaccaagtgaccttcaccttcagatt
ggatacaaagttgaacgacacatgtgtgatggggacattattgtgttcaacagacagccc
acactccacaaaatgtctatgatggggcatagagtacgaatcttgccttggtcaacgttt
cgactcaacctcagtgttacgaccccatacaatgctgactttgacggagatgagatgaac
ctgcacttgccacaatctctggagacccgtgctgagatccaggagctggctatggtgcct
cgcatgattgtcacaccacagtccaacagacccgtcatgggtattgtgcaggacacactg
acagctgtgcgcaagttcaccaagagagatgtctttttagagaggggtgaggtgatgaac
ctcctcatgtttctctctacatgggatggcaaagtgccccaaccggctatattgaagcct
cgacccctctggacgggcaaacagatcttcagcctgatcatccctgggcacattaatgcc
atccgcacacacagcactcaccctgatgaagaggacagcggcccttataaacacatctcg
cctggagacactaaggtaattgtggagaacggtgagctgatcatggggatcctgtgtaag
aagtcactgggaacctcagctggctctcttgtccatatctcataccttgagatggggcat
gacatcacacgactcttctattccaacatccagaccgtcgtcaacaactggctgctcatt
gaaggtcactctattggtattggagactccattgctgataaggctacatatcaggacatt
cagaacactattaagaaagccaagcaggatgtgatagaggtcattgagaaagcccacaac
aatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgctcgagacaagactggatcctctgcccagaaatcactgtcagag
tacaacaatttcaaatccatggtggtggctggctcaaaaggctctaaaattaacatttcg
caggttattgctgttgtgggacagcagaacgttgagggtaagcgaatccctttcggtttc
aaacaccgcaccctccctcacttcattaaagatgattatggtccagaaagtagaggcttc
gtggaaaactcctatctggctggtctcacaccaactgagtttttctttcacgccatggga
ggaagagagggtctgatcgacacggctgtcaaaactgctgagacaggttatattcagcgt
cgtctgatcaagtctatggagtcggttatggtaaagtatgatgctacggttagaaactca
atcaatcaagttgtccagctgaggtatggagaggatgggctggcaggagaggccgtggag
ttccaaaacatggccacacttaagccgtccaacaaagcctttgagaagaagttcaggttt
gactgcaccaacgaacgagctcttcgccgcactctacaggaagatgtagtgaaagatgtg
atgaccaatgcccatgtccagagtgctctagagaaagagtttgaaaagatgagggaagac
cgagagatcctgagggccattttccccacaggagacagcaaggtggtactaccgtgcaat
ctggccagaatgatctggaatgctcagaagattttccgcatcaatcctcggacaccaact
gaccttaacccagtacgagtagttgaaggagttcaagagttgagtaagaagctggttatt
gtaaatggtgacgaccagttaagtaggcaggcccaggaaaatgccactctgctgttcaac
atccacctgcgctccaccctctgctctaagagaatgactgaggagttccgtcttagcaca
gaggcttttgattggctgctgggagagatcgagaccaaatttaaccaatccattgctcac
cctggtgagatggtaggtgctctggctgcccagtctctgggagaacctgctactcagatg
accctgaacacattccactacgccggtgtgtccgccaaaaacgtcactctcggtgtgcct
cgtctcaaagaacttatcaacatctccaagcgacccaagaccccctccctgaccgtcttt
ctcttgggccaagcggcccgtgacgcagagagggccaaagatatcctgtgtcggttggag
cacacaaccctgcgcaaggtcactgccaacacggccatttattatgaccccaacccacag
aacacagtggtgactgaagatcaggagtgggtcaacgtgtactatgagatgcctgacttc
gatgtgacccgcatttcaccctggttgctgcgtattgaacttgaccgcaaacacatgact
gaccgcaagctgactatggagcaaattgcagagaagatcaatgcaggatttggtgatgac
ctaaactgcatcttcaatgatgacaatgctgagaaactggtattgcgaatccgcatcatg
aatagtgatgagaacaaatttcaagaggatgaagaggtagtggataagatggatgatgat
gtcttccttcgctgcattgaatccaacatgctgacagacatgaccctgcaaggcattgag
cagatcagcaaggtgtacatgcatcttccacagacagacaacaagaagaaaatcatcatc
acagaagatggagaattcaaagccctacaagagtggatcctggaaacagatggagtcagt
ctcatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaatgacatc
gtggagattttcactgttcttggtattgaggctgtgcgtaaggcactggaaagagagttg
taccatgtcatctcttttgacggttcttacgttaactaccgccatcttgccttgctgtgt
gacacaatgacctgcaggggtcacttgatggctatcactcgtcacggtatcaacagacag
gacactggaccgctaatgaagtgctcttttgaagagacggtggatgtgttgatggaagct
tcttcacatggtgaatgtgacccaatgaagggagtgtctgagaacatcatgctgggacag
cttgctcctgcaggcactggctgttttgacctgctgttggatgctgaaaagtgcaagtat
ggcatggagatccccaccaacatccctggtatcagtgtcgcaggacccacaggcatgttc
tttggctctgcccccagccctatgagtggcatgtctccagccatgactccgtggaacaca
ggagccactcctgcgtatggtgcctggtctcctagtgttggaagtggaatgacaccaggt
gctgcaggcttctctcccagcgctgcatccgatgccagtggcttctcacccggctattct
cctgcctggtcccctactcctggttctcctggatcgcctggaccagctagcccttatatc
ccctcaccaggagccttgtctcccaattactctccaacctctcctgcctacgagcctcgt
tctcctggtggatacacccctcagagccctggctactctccgacctctccatcgtactcg
ccaacttcaccatcttattctcccaccagcccgaactacagccccacatctccgtcttac
tcgcccacgtcaccctcctactctccaacttcgccatcttattctccaacatctccaagc
tactccccaacttcgccgtcttactctccgacttcaccttcttactctcccacttcacct
tcttattctcccacttcaccttcttactccccgacttcaccatcctactctccaacatcc
cccagctacagccccacgtctccatcttattcccccacctccccgtcttattccccaacc
tctccgtcttactctccaacctctccaagctactccccaacctccccgtcctattcccca
acatctccgagctacagccccacttcgcccaactacacgcccacctcacccagttactct
ccaacctccccatcttacagtcccacctcaccatcctactctcccacctctcccaattac
accccaaccagccccaattattcccccacctctccttcatactcccccacttcaccgtcc
tactctccatccagcccacgctacaccccgcaatctcccacctacaccccgagctcgccc
tcttacagcccgagctctccatcctattcccccacctctccaaaatacacgcccacctcc
ccctcttatagtcccagctctcctgaatataccccaacatcccccaaatattcccccact
tccccaaagtactctcccacttcacccaaatacagtcccacctctccaacctactctcca
actacacccaagtacagcccaacttcccctacttactctccaacctctcccacctacacc
ccaaccagccccaaatactctcccacctctccaacttactccccaacttctccgaaatac
tctcctacatctcctacctactctccaactagtcccaagggctctacttacagccccact
tcaccaggctacagccccacctctccgacctacagcccagccatcagccctgacgatagc
gatgaagaaaataactaa
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integrated database retrieval system
